View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11623_low_11 (Length: 241)
Name: NF11623_low_11
Description: NF11623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11623_low_11 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 241
Target Start/End: Original strand, 2928416 - 2928635
Alignment:
| Q |
17 |
attaatcataccgccggttgaaaggtagtctattgacaagtggtaacacacttttttcataatcaatggtgacaaatatctgaagcatcctatgtatagc |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
2928416 |
attaatcataccgccggttgaaaggtagtctattgacaagtggtaacacacttttttcataatcaatggtgacaaata-----agcatcctatgtatagc |
2928510 |
T |
|
| Q |
117 |
ataaaaccacaagttctttgttacctgttcagcaaagtgtcgagcaacaacacgcgcaacctaattaacacgaaaaccaacataaaccaataagtctcta |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2928511 |
ataaaaccacaagttctttgttacctgttcaacaaagtgtcgagcaacaacacgcgcaacctaattaacacgaaaaccaacataaaccaataagtctcta |
2928610 |
T |
|
| Q |
217 |
ttatcattcattagctgaaattagc |
241 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
2928611 |
ttatcattcattagctgaaattagc |
2928635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 224
Target Start/End: Complemental strand, 2310655 - 2310448
Alignment:
| Q |
17 |
attaatcataccgccggttgaaaggtagtctattgacaagtggtaacacacttttttcataatcaatggtgacaaatatctgaagcatcctatgtatagc |
116 |
Q |
| |
|
|||| |||||||| || ||||||||||||| || || ||||||| ||| ||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2310655 |
attagtcataccgacgattgaaaggtagtcgatcgataagtggtgacaatcttttttcaaaatcaatggtgacaaatatctcaagcatcctatgtatagc |
2310556 |
T |
|
| Q |
117 |
ataaaaccacaagttctttgttacctgttcagcaaagtgtcgagcaacaacacgcgcaacctaattaacacgaaaaccaacataaaccaataagtctcta |
216 |
Q |
| |
|
||||||||| ||| ||||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
2310555 |
ataaaaccagaagctctttgttatcttttcagcaaagtgtcgagcaacaacatgcgcaacctaattaacacgaaaaccaacataaactgattagtctcta |
2310456 |
T |
|
| Q |
217 |
ttatcatt |
224 |
Q |
| |
|
|||||||| |
|
|
| T |
2310455 |
ttatcatt |
2310448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University