View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11623_low_4 (Length: 409)
Name: NF11623_low_4
Description: NF11623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11623_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 7 - 398
Target Start/End: Complemental strand, 46777640 - 46777255
Alignment:
| Q |
7 |
agatacactgatgctatccaaatatagaaagaatattgctaaatattatgaaggttatcacacacaaaataagaaagaacgacgtatctcaattttgaag |
106 |
Q |
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| T |
46777640 |
agatacactgatgctatccaaatatagaaagaatattgctaaatattatgaaggttatcacacacaaaataagaaagaacgacgtatctcaattttgaag |
46777541 |
T |
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| Q |
107 |
aagaaattcctcaaaattcatcatcatagtggggtatgtcattgaaaagaatccatatatctatctgcttataatttcgtactttgaattttcgtaaaca |
206 |
Q |
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| T |
46777540 |
aagaaattcctcaaaattcatcatcatagtggggtatgtcattgaaaagaatccatatatctatctgcttataatttcgtactttgaattttcgtaaaca |
46777441 |
T |
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| Q |
207 |
tatttcat-gaacattttcttac-ttttataaattaaattctacgaccacttttcttaacacgtaccttttgtttaatatgtttatggtatattttgaaa |
304 |
Q |
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| T |
46777440 |
t-tttcttataaca----cgtacattttataaattaaattctacgaccacttttcttaacacgtaccttttgtttaatatgtttatggtatattttgaaa |
46777346 |
T |
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| Q |
305 |
gcaagaaatgatgttatctttcaaaaataaatatttcaattatgatttacatcattggcaagttcaaaggttaaggttcttgtatccctcttca |
398 |
Q |
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| T |
46777345 |
gcaagaaatgatgttatctttc--aagtaaatatttcaattatga-aaatatcattggcaagttcaaaggttaaggttcttgtatccctcttca |
46777255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 452256 - 452296
Alignment:
| Q |
284 |
tgtttatggtatattttgaaagcaagaaatgatgttatctt |
324 |
Q |
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| T |
452256 |
tgtttatggtctattttgaaagcaacaaatgatgttatctt |
452296 |
T |
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