View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11623_low_6 (Length: 375)
Name: NF11623_low_6
Description: NF11623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11623_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 18 - 364
Target Start/End: Complemental strand, 45024544 - 45024204
Alignment:
| Q |
18 |
caacaaacataatagaaattgtttgtagaatgtattgtaagattccaacagaggacagaggaactgctaaccatagttgtctcttcaattctgctatcac |
117 |
Q |
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| T |
45024544 |
caacaaacataatagaaattgtttgtagaatgtattgtaagattccaacagaggacagaggaactgctaaccatagttgtctcttcaattctgctatcac |
45024445 |
T |
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| Q |
118 |
taactcttgtctctcacttctcatctttgatattttctgtaatcactcaagttcctaccttatacagattttgttaaatgtcaccggaaacccgatattt |
217 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45024444 |
taactcttgtctctcacttctcatcattgatattttctgtaatcactcaagttcctaccttatacagattttgttaaatgtcaccggaaacccgatattt |
45024345 |
T |
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| Q |
218 |
aacggtataagtcatnnnnnnnnnnnnnnnnnnnnnngtacaaagaaagcagtgaccacaatgaatactgcattcgtcacaaccgaacctccgcaaannn |
317 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45024344 |
aacggtataagtcat------agaaagaagaagaagagtacaaagaaagcagtgaccacaatgaataatgcattcgtcacaaccgaacctccgcaaattt |
45024251 |
T |
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| Q |
318 |
nnnngtcaattgtatgtatgtgttgtacaaatgcatgatatcttctt |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45024250 |
ttttgtcaattgtatgtatgtgttgtacaaatgcatgatatcttctt |
45024204 |
T |
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