View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11623_low_7 (Length: 295)
Name: NF11623_low_7
Description: NF11623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11623_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 16 - 284
Target Start/End: Original strand, 35340937 - 35341201
Alignment:
| Q |
16 |
attatatcataccagacaaacaattcatgttcaacaaacaagtgcagtagttttaaacttgcaccaaaccaatgtttgcgttagttagatgttcttgtaa |
115 |
Q |
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| T |
35340937 |
attatatcataccagacaaacaattcatgttcaacaaataagtgcagtagttttaaacttgcaccaaaccaatgtttgcgtta----gatgttcttgtaa |
35341032 |
T |
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| Q |
116 |
gataaggttatagttaaggacatgtaagttatagatacctacttttgtgatcatgtaccacaatgatagtgaacaaacaaattcacaatttatattaagc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35341033 |
gataaggttatagttaaggacatgtaagttatagatacctacttttgtgatcatgtaccacaatgatagtgaacaaacaaattcacaatttatattaggc |
35341132 |
T |
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| Q |
216 |
tcactcctaaaccatttaatttcctcccgcttacaaagcttcatcaccacctccagtttgttgtttcat |
284 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35341133 |
tcgctcctaaaccatttaatttcctcccgcttacaaagcttcatcaccacctccagtttgttgtttcat |
35341201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 99 - 284
Target Start/End: Complemental strand, 15492885 - 15492700
Alignment:
| Q |
99 |
gttagatgttcttgtaagataaggttatagttaaggacatgtaagttatagatacctacttttgtgatcatgtaccacaatgatagt-gaacaaacaaat |
197 |
Q |
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|||||||||||||||| |||||||||||| | | ||||||| |||| ||| ||| ||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
15492885 |
gttagatgttcttgtaggataaggttatactcacggacatgcgagttttaggtacttacttttgtgatcatgtaccacaataatagtctaacaaacaaat |
15492786 |
T |
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| Q |
198 |
tcacaatttatattaagctcactcctaaaccatttaatttcctcccgcttacaaagcttcatcaccacctccagtttgttgtttcat |
284 |
Q |
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| T |
15492785 |
tcacaattcatgttaagctcactgcttaaccatttaattt-ctccaacttacagagctgcatcaccgccgcctgtttgctgtttcat |
15492700 |
T |
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