View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11623_low_8 (Length: 266)

Name: NF11623_low_8
Description: NF11623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11623_low_8
NF11623_low_8
[»] chr2 (3 HSPs)
chr2 (1-256)||(34241446-34241701)
chr2 (1-256)||(34251208-34251463)
chr2 (6-156)||(34315618-34315768)


Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 34241446 - 34241701
Alignment:
Q  1 cataagttgaatttccaaaaggttgtattttattgtcatgaagttcatggaacaacagcttttaaggttccattggtggctaatgatggaacaaaaactc 100  Q
    |||| |||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241446 cataggttgaactttcaaaaagttgtattttattgtcatgaagttcatggaacaacagcttttaaggttccattggtggctaatgatggaacaaaaactc 34241545  T
Q  101 atgcaatagctacttgccatgctgatacttcaggcatgaatcaacatatgcttcatcagattatgaaaggtgatcctggtagtaaccctgtttgtcattt 200  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34241546 atgcaatagctacttgccatgctgatatttcaggcatgaatcaacatatgcttcatcagattatgaaaggtgatcctggtagtaaccatgtttgtcattt 34241645  T
Q  201 ccttggaaataaggctattttatgggtacctaatttaggtttggacaatgcctatg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34241646 ccttggaaataaggctattttatgggtacctaatttaggtttggacaatgcctatg 34241701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 34251208 - 34251463
Alignment:
Q  1 cataagttgaatttccaaaaggttgtattttattgtcatgaagttcatggaacaacagcttttaaggttccattggtggctaatgatggaacaaaaactc 100  Q
    |||| |||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  34251208 cataggttgaactttcaaaaggttgtattttattgtcatgaaattcatggaacaacagcttttatggttccattggtggctaatgatggaagaaaaactc 34251307  T
Q  101 atgcaatagctacttgccatgctgatacttcaggcatgaatcaacatatgcttcatcagattatgaaaggtgatcctggtagtaaccctgtttgtcattt 200  Q
    | ||| |||||  ||| ||| ||||||||||||||||||||||  | ||||| || ||||||||||||| ||||||||||||||| ||||| || |||||    
T  34251308 aggcactagctgtttgtcatactgatacttcaggcatgaatcatgaaatgctgcaacagattatgaaagctgatcctggtagtaaacctgtgtgccattt 34251407  T
Q  201 ccttggaaataaggctattttatgggtacctaatttaggtttggacaatgcctatg 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34251408 ccttggaaataaggctattttatgggtacctaatttaggtttggacaatgcctatg 34251463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 156
Target Start/End: Original strand, 34315618 - 34315768
Alignment:
Q  6 gttgaatttccaaaaggttgtattttattgtcatgaagttcatggaacaacagcttttaaggttccattggtggctaatgatggaacaaaaactcatgca 105  Q
    ||||||||||||||||||||||| ||||||||||  | ||| || ||| |||||||| | |||||| ||||||||   ||||||||| |||||||| |||    
T  34315618 gttgaatttccaaaaggttgtatattattgtcatagaattcgtgcaaccacagctttcatggttccgttggtggccggtgatggaaccaaaactcaagca 34315717  T
Q  106 atagctacttgccatgctgatacttcaggcatgaatcaacatatgcttcat 156  Q
    ||||||  |||||||||||||||||| || ||||||||||| |||||||||    
T  34315718 atagctgtttgccatgctgatacttctggtatgaatcaacagatgcttcat 34315768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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