View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11623_low_9 (Length: 249)
Name: NF11623_low_9
Description: NF11623
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11623_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 19216804 - 19216578
Alignment:
| Q |
1 |
cacatggtatcgtattaatgttggatactagacacgtcttcgatcagaggtatcaattggtgcaatagagaaaaacaccgtttggcctcatttcccataa |
100 |
Q |
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| T |
19216804 |
cacatggtatcgtattaatgttggataccagacacgtcttcgatcagaggtatcgattggtgaaatataggaaaacaccgtttgacctcatttcccataa |
19216705 |
T |
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| Q |
101 |
gcgggattggaaaataaaattattattgtccttatcgtttatatacgtttctcataataaataaataaaaccacctattacttaaactcttagtactctc |
200 |
Q |
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| T |
19216704 |
gcgggaatggaaaataaaat---tattgtccttatcttttatatacgtttctcataatata-aaaaaaagccacctattacttaaactcttagtactccc |
19216609 |
T |
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| Q |
201 |
tcgaatcaatacaaaaatcacaatttgtgtg |
231 |
Q |
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| T |
19216608 |
tcgaatcaatacaaaaatcacaatttgtgtg |
19216578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 27 - 236
Target Start/End: Complemental strand, 19260179 - 19259980
Alignment:
| Q |
27 |
actagacacgtcttcgatcagaggtatcaattggtgcaatagagaaaaacaccgtttggcctcatttcccataagcgggattggaaaataaaattattat |
126 |
Q |
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| T |
19260179 |
actagacacgtcttcgattagaggtatcaattggtgcaatagagaaaaacattgtttggcctcgtttcccataagcgggattggaaaataaaattattat |
19260080 |
T |
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| Q |
127 |
tgtccttatcgtttatatacgtttctcataataaataaataaaaccacctattacttaaactcttagtactctctcgaatcaatacaaaaatcacaattt |
226 |
Q |
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| T |
19260079 |
tgtccttatcgtttatatacgtttctcataataaataaataaaaccacatattactt----------tactctctcgaattaatacaaaaatcacaattt |
19259990 |
T |
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