View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11624_high_2 (Length: 487)
Name: NF11624_high_2
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11624_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 53453881 - 53453413
Alignment:
| Q |
1 |
caaagtaagacatcttcgtagttagtgtattggtgtggattttcaccgtcaactaactgtgatattgttgtaactaaattttcatgtgttaacataacac |
100 |
Q |
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| T |
53453881 |
caaagtaagacatcttcgtagttagtgtattggtgtggattttcaccgtcaactaactgtgatattgttgtaactaaattttcatgtgttaacataacac |
53453782 |
T |
|
| Q |
101 |
cttttggtaaaccagaagttcctgaagaaaacggtaacgcaaccacgtcgtttgggtttattttaacttctggtaattcgttttcatcagcatttgttaa |
200 |
Q |
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| T |
53453781 |
cttttggtaaaccagaagttcctgaagaaaacggtaacgcaactacatcgtttgggtttatttttacttctggtaattcgttttcatcagcatttgttaa |
53453682 |
T |
|
| Q |
201 |
agcagaaaagttcacaacatgttcatcttcctccggtgatgaatcaatgcacacgattttgatgtcgttgagttttgcgaaatcattgattttattgaga |
300 |
Q |
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| T |
53453681 |
aacagaaaaatccacaacattttcatcttcctccggtgatgaatcaatgcacacgattttgatgtcgatgagttttgcgaaatcgttgattttattgaga |
53453582 |
T |
|
| Q |
301 |
tacgcggattgtgttatgatgagtttagattttgttgcggtggcttgtttagcgagctccgatgaggtgtagaagggatttgcggtggtgataaccgcgc |
400 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53453581 |
tatacggattgtgttatgatgagtttagattttgttgcggtggcttgtttagcgagctccgatgaggtgtagaagggatttgcggtggtgataaccgcgc |
53453482 |
T |
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| Q |
401 |
cacggaaggaggcaccgaggaaggtgagagcaaattgaggagagttacggaggacgatcatgatgacat |
469 |
Q |
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| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53453481 |
cgcggaaggaggcaccgaggaaggtgagtgcaaattgaggagagttacggaggacgatcatgatgacat |
53453413 |
T |
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