View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11624_high_20 (Length: 263)
Name: NF11624_high_20
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11624_high_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 35448979 - 35449225
Alignment:
| Q |
1 |
atattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35448979 |
atattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagca |
35449078 |
T |
|
| Q |
101 |
gacatatcaaccatacgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtattgccgacaattgggcaggcctccaggacattttcat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35449079 |
gacatatcaaccatacgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtattgccgacaattgggcaggcctccaggacattttcat |
35449178 |
T |
|
| Q |
201 |
cagtaccaaacatgcgagtagaagaacttggatattcaggttctgat |
247 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35449179 |
caataccaaacatgcgagtagaagaacttggatattcaggttctgat |
35449225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 35448751 - 35448992
Alignment:
| Q |
1 |
atattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagca |
100 |
Q |
| |
|
||||||||||| | |||||||||| |||||||| |||||| || ||| ||||||| ||||||||||||| |||||||||| ||| |||||| |||||| |
|
|
| T |
35448751 |
atattcaggttgtactatggccatctgcccattaactccttgctgcaaatccatgtttgagttctgactatgatgcatgcttaaaatatctccgtgagca |
35448850 |
T |
|
| Q |
101 |
gacatatcaaccatacgaaatggtgatccagtaccgttattaaagattggcgtagctgatgtattgccgacaattgggcaggcctccaggacattttcat |
200 |
Q |
| |
|
||||| ||||||||| |||||| |||||| ||| ||| || |||||||| ||||||||| ||| | |||||||||||||| ||||| ||||||||||| |
|
|
| T |
35448851 |
gacatctcaaccatatgaaatgatgatcc---accattactatagattggcatagctgatgcattcctgacaattgggcaggtctccatgacattttcat |
35448947 |
T |
|
| Q |
201 |
cagtaccaaacatgcgagtagaagaacttggatattcaggttctg |
245 |
Q |
| |
|
|| ||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
35448948 |
caacaccaaacatgctaggagaagaacttggatattcaggttctg |
35448992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 35449210 - 35449339
Alignment:
| Q |
1 |
atattcaggttctgttatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagca |
100 |
Q |
| |
|
|||||||||||||| |||||| || ||| ||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
35449210 |
atattcaggttctgatatggctattccctcattaattccttgttgaaagcccatgttcgtgttctgactataatgcatggttgaacaatctccttgagca |
35449309 |
T |
|
| Q |
101 |
gacatatcaaccatacgaaatggtgatcca |
130 |
Q |
| |
|
|||| |||||||||| ||| | ||||||| |
|
|
| T |
35449310 |
gacacgtcaaccataccaaacgatgatcca |
35449339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 35440974 - 35441087
Alignment:
| Q |
16 |
tatggccatccccccattaattccttgttgaaaacccatgttcgagttctgactataatgcatgcttgaaaaatctccatgagcagacatatcaaccata |
115 |
Q |
| |
|
||||| ||| |||||||||| ||||||||| | ||||||||| ||||||||| || || |||||||| || |||||||||||||||| ||||||||||| |
|
|
| T |
35440974 |
tatggtcattcccccattaactccttgttgcatacccatgtttgagttctgagtaaaagtcatgcttggaatatctccatgagcagacgtatcaaccata |
35441073 |
T |
|
| Q |
116 |
cgaaatggtgatcc |
129 |
Q |
| |
|
| ||||| |||||| |
|
|
| T |
35441074 |
ccaaatgatgatcc |
35441087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 35454520 - 35454565
Alignment:
| Q |
77 |
atgcttgaaaaatctccatgagcagacatatcaaccatacgaaatg |
122 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||||||||| ||||| |
|
|
| T |
35454520 |
atgcttgaaatatctccatgagcagacttatcaaccataccaaatg |
35454565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University