View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11624_high_26 (Length: 242)
Name: NF11624_high_26
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11624_high_26 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 38422545 - 38422323
Alignment:
| Q |
1 |
cgatattaggagaataaaaatagcttggttgttagtaagtaattccatcacaactccactataaaagatggatttgactcactctaatatgaacaactca |
100 |
Q |
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| T |
38422545 |
cgatattaggagaataaaaatagcttggttgttagtaagtaattccatcacaactccactataaaagatggatttgactcactctaatgtgaacaactca |
38422446 |
T |
|
| Q |
101 |
ctttaaagagtaacgtgagtaatatcaattatcgataaacaaattaataattgaattttgaaatataccatgagtttactttcgattcattgacaatcta |
200 |
Q |
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| T |
38422445 |
ctttaaagagtaacgtgagtaatatcaattatcgataaaaaaattaataattaaattttgaaatataccatgagtttactttcgatacattgacaatcta |
38422346 |
T |
|
| Q |
201 |
cgatgactttgcacagatgtccg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
38422345 |
cgatgactttgcacagatgtccg |
38422323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 90 - 148
Target Start/End: Complemental strand, 14314472 - 14314414
Alignment:
| Q |
90 |
tgaacaactcactttaaagagtaacgtgagtaatatcaattatcgataaacaaattaat |
148 |
Q |
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| T |
14314472 |
tgaacaactcacttcaaagaataaagtgagtgatatcaactatcgatgaacatattaat |
14314414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 128
Target Start/End: Original strand, 43034330 - 43034367
Alignment:
| Q |
91 |
gaacaactcactttaaagagtaacgtgagtaatatcaa |
128 |
Q |
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|||||| |||||||||||||||| |||||||||||||| |
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| T |
43034330 |
gaacaattcactttaaagagtaaagtgagtaatatcaa |
43034367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 52849416 - 52849456
Alignment:
| Q |
90 |
tgaacaactcactttaaagagtaacgtgagtaatatcaatt |
130 |
Q |
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|||||||||||||||| | ||||| |||||||||||||||| |
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| T |
52849416 |
tgaacaactcactttagaaagtaaagtgagtaatatcaatt |
52849456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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