View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11624_high_3 (Length: 477)
Name: NF11624_high_3
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11624_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 423; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Complemental strand, 25866911 - 25866457
Alignment:
| Q |
18 |
caaataagtcaattcaaacaaactctttgtctttgtatggaaaatatattgttaagtcatgacagttacttttctgtacatcaactctgtgttttatttt |
117 |
Q |
| |
|
||||||| ||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
25866911 |
caaataactcaattcgaacaaactcttagtcttagtatggaaaatatattgttaagtcatgacagttacttctctgtacatcaattctgtgttttatttt |
25866812 |
T |
|
| Q |
118 |
ggatacaggaatttctgaagatgagaagcaaaggcttttgcactgtgttgttgtgggaggtggtcctactggagttgaattcagcggcgaacttagtgat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25866811 |
ggatacaggaatttctgaagatgagaagcaaaggcttttgcactgtgttgttgtgggaggtggtcctactggagttgaattcagcggcgaacttagtgat |
25866712 |
T |
|
| Q |
218 |
tttatcatgaaggatgttcgtcaaagatatactcatgtgaaggattacatccgtgttactttaattgaggtatgtttaatatcatcaaatatgtaataca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25866711 |
tttatcatgaaggatgttcgtcaaagatatactcatgtgaaggattacatccgtgttactttaattgaggtatgtttaatatcatcaaatatgttataca |
25866612 |
T |
|
| Q |
318 |
aagttatggaagccattttttgttaggaaattaccatttttattcatgccaaagatatcgtctaagttaatttatgttgctaaccaattttgttcatgtc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25866611 |
aagttatggaagccattttttgttaggaaattaccatttttattcatgccaaagatatcgtctaagttaatttatgttgctaaccaattttgttcatgtc |
25866512 |
T |
|
| Q |
418 |
ctattaggcaaatgaaatattatcttctttcgatgaccgactcaggctctctgct |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25866511 |
ctattaggcaaatgaaatattatcttctttcgatgaccgactcaggctctatgct |
25866457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 115 - 311
Target Start/End: Complemental strand, 30218575 - 30218379
Alignment:
| Q |
115 |
tttggatacaggaatttctgaagatgagaagcaaaggcttttgcactgtgttgttgtgggaggtggtcctactggagttgaattcagcggcgaacttagt |
214 |
Q |
| |
|
||||||| |||| ||||| ||||| |||||| ||||||| || |||||||| ||||| |||||||||||||| ||||||||||| || || ||||||||| |
|
|
| T |
30218575 |
tttggatgcagggatttcggaagaggagaagaaaaggctgttacactgtgtggttgtcggaggtggtcctacgggagttgaatttagtggtgaacttagt |
30218476 |
T |
|
| Q |
215 |
gattttatcatgaaggatgttcgtcaaagatatactcatgtgaaggattacatccgtgttactttaattgaggtatgtttaatatcatcaaatatgt |
311 |
Q |
| |
|
||||||||||||| ||||||||||| |||||| ||||||||||||| || |||| ||||||||| ||||||||||| ||| |||||| | |||||| |
|
|
| T |
30218475 |
gattttatcatgagagatgttcgtcagagatatgctcatgtgaaggactatatccatgttactttgattgaggtatgcttagtatcattagatatgt |
30218379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University