View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11624_high_6 (Length: 432)
Name: NF11624_high_6
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11624_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Original strand, 36291199 - 36291611
Alignment:
| Q |
1 |
aagtgaagcaacaactcttcccttgccggtcaaacctttgctcacttccatgaagagatatgatgatacagaagaatttaatactgaaccttttgatgcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36291199 |
aagtgaagcaacaactcttcccttgccggtcaaacctttgctcacttccatgaggagatatgatgatacagaagaatttaatactgaaccttttgatgcc |
36291298 |
T |
|
| Q |
101 |
tcagttgatctgactgtcacagggagatagatgcaaacaatccccttaaaatagaaaacctagttccatacaatagcattatgtacatgtcatttgaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36291299 |
tcagttgatctgactgtcacagggagatagatgcaaacaatccccttaaaatagaaaacctagttccatacaatagcattatgtacatgtcatttgaatt |
36291398 |
T |
|
| Q |
201 |
tgtttatagatatttactctaatgtgtggtcatgtattgtatataaagttgtatattattattgtgtcctggttatataccgttgtaataagatgtagga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36291399 |
tgtttatagatatttactctaatgtgtggtcatgtattgtatataaagttgtatattattattgtgtcctggttatataccgttgtaataagatgtagga |
36291498 |
T |
|
| Q |
301 |
aacaaggaagctgatgaaagctgttaatctaaacagcaacaacccaaaattatcatggcatctcttgaagcgtaggatgcaaccttgacattgaaaaata |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36291499 |
aacaagga-----atgaaagctgttaatctaaacagcaacaacccaaaattatcatggcatctcttgaagcgtaggatgcaaccttgacattgaaaaata |
36291593 |
T |
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| Q |
401 |
ttagttaaaatagtttat |
418 |
Q |
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|||||||||||||||||| |
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| T |
36291594 |
ttagttaaaatagtttat |
36291611 |
T |
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