View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11624_low_10 (Length: 389)
Name: NF11624_low_10
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11624_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 25866461 - 25866077
Alignment:
| Q |
1 |
atgctaccaagcagttaacaaaggtaagctatatcttgatggaggcatttcttcatttggaatgtttcatatgagtaaaagtttaacatatgcgtctata |
100 |
Q |
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| T |
25866461 |
atgctaccaagcagttaacaaaggtaagctatatcttgatagaggcatttcttcatttggaatgtttcatatgagtaaaagtttaacatatgcgtctata |
25866362 |
T |
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| Q |
101 |
gaaattatgtttatacaagaattatgtatttcacaaactgttgaaactcttcat-----atgatagtattagtatctgaattgtcaaggtagttgttaaa |
195 |
Q |
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| T |
25866361 |
gaaattatgtttatacaagaattatgtatttcacaaactgatgaaactcttcatcaattatgatagtattagtatctgaattgacaaagtagttgttaaa |
25866262 |
T |
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| Q |
196 |
agtgttccatattagtttttatattttccaatattgtagtttatctcagtcaggagttcgtcttgttcgtggcattgtgaaagatgttaaagctcagaag |
295 |
Q |
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| T |
25866261 |
actgttccatattagttt--atattttccaatattgtagtttatctcagtcaggagttcgtcttgttcgtggcattgtgaaagatgttaaagctcagaag |
25866164 |
T |
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| Q |
296 |
attatcctaaatgatggtactgaggttccatttggtttgctggtatggtctactggtgttggcccatcaccaattattcaatctctg |
382 |
Q |
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| T |
25866163 |
attatcctaaatgatggtaccgaggttccatttggtttgctggtatggtctactggtgttggcccatcaccaattattcaatctctg |
25866077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 241 - 366
Target Start/End: Complemental strand, 30217959 - 30217834
Alignment:
| Q |
241 |
tcagtcaggagttcgtcttgttcgtggcattgtgaaagatgttaaagctcagaagattatcctaaatgatggtactgaggttccatttggtttgctggta |
340 |
Q |
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| T |
30217959 |
tcagtcaggagtgcgacttgttcgaggcattgtgaaagatgtacaagaaaagaagattatacttaacgatggtactgaggttccatacggattgctggtt |
30217860 |
T |
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| Q |
341 |
tggtctactggtgttggcccatcacc |
366 |
Q |
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||||||||||| ||||| |||||||| |
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| T |
30217859 |
tggtctactggagttggtccatcacc |
30217834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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