View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11624_low_13 (Length: 347)

Name: NF11624_low_13
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11624_low_13
NF11624_low_13
[»] chr1 (7 HSPs)
chr1 (18-336)||(28662915-28663233)
chr1 (225-336)||(28604847-28604958)
chr1 (18-156)||(28635412-28635550)
chr1 (225-336)||(28635225-28635336)
chr1 (18-156)||(28654693-28654831)
chr1 (22-156)||(28605244-28605378)
chr1 (234-336)||(28654521-28654620)


Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 28663233 - 28662915
Alignment:
Q  18 caagggacattctttctccacagcagctttgatggtttttacatacttgaagtttcgcatcccggaacttctctctgatgtctgttccgatactacatcg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28663233 caagggacattctttctccacagcagctttgatggtttttacatacttgaagtttcgcatcccggaacttctctctgatgtctgttccgatactacatcg 28663134  T
Q  118 cccaccgattctaaaagcagggatgcatcgcatgactgcgtggaaacccacatatatatcattatattaactgcttctttaatccaaaaatgataacttc 217  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||     
T  28663133 cccaccgattctaaaagcagggatgcatcacatgactgcgtggaaacccacatatatatcattatattaattgcttctttaatccaaaaatgataacttg 28663034  T
Q  218 ctgcgattatatttatactcacctcgactatgcaatcatggaagagatttctaacccacgaaaccgctgtgtttccatgctcgttatacagttcaatgac 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28663033 ctgcgattatatttatactcacctcgactatgcaatcatggaagagatttctaacccacgaaaccgctgtgtttccatgctcgttatacagttcaatgac 28662934  T
Q  318 tttttgcttgatgatctct 336  Q
    |||||||||||||||||||    
T  28662933 tttttgcttgatgatctct 28662915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 225 - 336
Target Start/End: Complemental strand, 28604958 - 28604847
Alignment:
Q  225 tatatttatactcacctcgactatgcaatcatggaagagatttctaacccacgaaaccgctgtgtttccatgctcgttatacagttcaatgactttttgc 324  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||| |||| |||||| ||||    
T  28604958 tatatttatactcaccttgactatgcaatcatggaagagatttctaacccacgaaattgctgtgtttccatgcttgttatacaattcattgacttgttgc 28604859  T
Q  325 ttgatgatctct 336  Q
    ||||||||||||    
T  28604858 ttgatgatctct 28604847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 28635550 - 28635412
Alignment:
Q  18 caagggacattctttctccacagcagctttgatggtttttacatacttgaagtttcgcatcccggaacttctctctgatgtctgttccgatactacatcg 117  Q
    |||||||||||||||||| ||||| ||||||||||| || ||||||||||| |||| ||||||  |||||||| | |||||||| |||||||| ||| |     
T  28635550 caagggacattctttctcgacagctgctttgatggtattcacatacttgaaatttctcatcccaaaacttctcaccgatgtctgctccgataccacacca 28635451  T
Q  118 cccaccgattctaaaagcagggatgcatcgcatgactgc 156  Q
      ||||| | ||||||||||||||||||| |||||||||    
T  28635450 tgcaccgttgctaaaagcagggatgcatcacatgactgc 28635412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 225 - 336
Target Start/End: Complemental strand, 28635336 - 28635225
Alignment:
Q  225 tatatttatactcacctcgactatgcaatcatggaagagatttctaacccacgaaaccgctgtgtttccatgctcgttatacagttcaatgactttttgc 324  Q
    ||||||||||||||| | |||| ||||||||||||||||||||| |||||| ||||  |||||||||||||||| |||||| |||||| |||||| |||     
T  28635336 tatatttatactcacgttgactgtgcaatcatggaagagatttcgaacccaggaaatggctgtgtttccatgctggttatatagttcagtgacttgttgt 28635237  T
Q  325 ttgatgatctct 336  Q
    ||||| ||||||    
T  28635236 ttgattatctct 28635225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 156
Target Start/End: Complemental strand, 28654831 - 28654693
Alignment:
Q  18 caagggacattctttctccacagcagctttgatggtttttacatacttgaagtttcgcatcccggaacttctctctgatgtctgttccgatactacatcg 117  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||||||| |||| ||||||  |||||||  | |||||||| |||||||| ||| ||    
T  28654831 caagggacattctttctcaacagcagctttgatggtgttcacatacttgaaatttctcatcccaaaacttcttaccgatgtctgctccgataccacaccg 28654732  T
Q  118 cccaccgattctaaaagcagggatgcatcgcatgactgc 156  Q
    | |  || | ||||||| | |||||||||||||||||||    
T  28654731 cgccacgttgctaaaagaaaggatgcatcgcatgactgc 28654693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 156
Target Start/End: Complemental strand, 28605378 - 28605244
Alignment:
Q  22 ggacattctttctccacagcagctttgatggtttttacatacttgaagtttcgcatcccggaacttctctctgatgtctgttccgatactacatcgccca 121  Q
    ||||||||||| || | |||||||||||||||  | |||||||||||||||| ||||||  |||||||||| | |||||| |||||||| ||  ||  ||    
T  28605378 ggacattctttttcaagagcagctttgatggtgctcacatacttgaagtttctcatcccaaaacttctctccgctgtctgctccgataccacgccgtgca 28605279  T
Q  122 ccgattctaaaagcagggatgcatcgcatgactgc 156  Q
    |||  || ||||||||||||||||| |||||||||    
T  28605278 ccgtctccaaaagcagggatgcatcacatgactgc 28605244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 234 - 336
Target Start/End: Complemental strand, 28654620 - 28654521
Alignment:
Q  234 actcacctcgactatgcaatcatggaagagatttctaacccacgaaaccgctgtgtttccatgctcgttatacagttcaatgactttttgcttgatgatc 333  Q
    |||||| | ||| |||||||||||||||||||||| || ||||||||  |||||| |||| ||    ||||| |||||| ||||||  |||||||| |||    
T  28654620 actcacattgaccatgcaatcatggaagagatttcgaagccacgaaatggctgtgcttccttg---attatatagttcagtgacttgctgcttgattatc 28654524  T

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