View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11624_low_14 (Length: 340)
Name: NF11624_low_14
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11624_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 320
Target Start/End: Original strand, 4286711 - 4287013
Alignment:
| Q |
18 |
acatcaaaaaatcataaatttgactacatgcaataaactagcacttggtaactactccccagtaatgtatgaacagaattttgagaggaggaaacaataa |
117 |
Q |
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| T |
4286711 |
acataaaaaaatcataaatttgactacatgcaataaactagcacttggcaactactccccagtaatgtatgaacagaattttgagaggaggaaacaataa |
4286810 |
T |
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| Q |
118 |
taacacacaggttttcattcaagattagattgttttatttagtcaagataatcaatgtttctttttatgcttaggaatgaaagcacgctatcaatattag |
217 |
Q |
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| T |
4286811 |
taacacacaggttttcattcaagattagattgttttatttagtcaagataatcaatgtttctttttatgcttaggaatgaaagcacgctatcaatattag |
4286910 |
T |
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| Q |
218 |
aactagtaaacacattttcttaaaacatgattgatgaaagcatgaagaaagtatatatattttaagaagcttcagttacaaacattagagcaaacatatc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||||| |
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| T |
4286911 |
aactagtaaacacattttcttaaaacatgattgatgaaagcatgaagaaagtatatatattataagaagcttcaattacaaactttagagcaaacatatc |
4287010 |
T |
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| Q |
318 |
caa |
320 |
Q |
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||| |
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| T |
4287011 |
caa |
4287013 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 19972170 - 19972224
Alignment:
| Q |
171 |
aatgtttctttttatgcttaggaatgaaagcacgctatcaatattagaactagta |
225 |
Q |
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| T |
19972170 |
aatgtttctttttatgcttgggaatgaagtgatgctatcaatattagagctagta |
19972224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 272
Target Start/End: Original strand, 19972245 - 19972306
Alignment:
| Q |
211 |
atattagaactagtaaacacattttcttaaaacatgattgatgaaagcatgaagaaagtata |
272 |
Q |
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| T |
19972245 |
atattagagctagtaaatgcgttttctcaaaacatggttgatcaaagcatgaagaaattata |
19972306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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