View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11624_low_17 (Length: 285)
Name: NF11624_low_17
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11624_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 37 - 269
Target Start/End: Original strand, 28404020 - 28404253
Alignment:
| Q |
37 |
tttattgattctttattaaacctt-gtaggatactacgtttcaactggttatgctacaatggcaacaaaacatgcattatcaccacgatttctaagcaac |
135 |
Q |
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| T |
28404020 |
tttattgattctttattaaacctttgtaggatactccatttcaacaagttatgcaacaatggcaacaaaacatgtaatattaccacgatttctaagcaac |
28404119 |
T |
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| Q |
136 |
gaatgcataaaatcactgttatcatcatgcaaaaccatgcaacaagctcatcaaatccacgctcacatcatcgtaaccggtcgccacaacaatctccatc |
235 |
Q |
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||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
28404120 |
gaacgcataaaatcactgttatcatcttgcaaaaccatgcaacaagctcatcaaatctacgctcacatcatcgtaaccggtcgccacaacaatctccatc |
28404219 |
T |
|
| Q |
236 |
tctccacaaccctcttcaccttctacgcttcttc |
269 |
Q |
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|||| ||||||||||||||||||||||||||||| |
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| T |
28404220 |
tctctacaaccctcttcaccttctacgcttcttc |
28404253 |
T |
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