View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11624_low_18 (Length: 272)

Name: NF11624_low_18
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11624_low_18
NF11624_low_18
[»] chr8 (29 HSPs)
chr8 (1-257)||(33445438-33445691)
chr8 (50-112)||(1230650-1230712)
chr8 (50-100)||(3102330-3102380)
chr8 (50-116)||(5880973-5881038)
chr8 (62-112)||(11104774-11104824)
chr8 (75-116)||(15167056-15167097)
chr8 (62-116)||(8020316-8020370)
chr8 (51-116)||(1244695-1244760)
chr8 (75-116)||(36588108-36588149)
chr8 (83-116)||(40919381-40919414)
chr8 (51-115)||(9070965-9071029)
chr8 (78-116)||(3757974-3758012)
chr8 (82-116)||(7280684-7280718)
chr8 (57-107)||(8078096-8078146)
chr8 (68-106)||(8694137-8694175)
chr8 (62-112)||(13284266-13284316)
chr8 (62-115)||(7433147-7433200)
chr8 (51-116)||(8148417-8148482)
chr8 (83-116)||(11708992-11709025)
chr8 (51-116)||(17704019-17704084)
chr8 (83-116)||(32878667-32878700)
chr8 (67-116)||(39021793-39021841)
chr8 (83-116)||(39821890-39821923)
chr8 (83-116)||(44019555-44019588)
chr8 (64-116)||(10320502-10320554)
chr8 (53-117)||(13105099-13105163)
chr8 (83-115)||(29908018-29908050)
chr8 (83-111)||(31336829-31336857)
chr8 (76-116)||(41625200-41625240)
[»] chr7 (39 HSPs)
chr7 (55-116)||(38553824-38553885)
chr7 (62-116)||(9522918-9522972)
chr7 (51-116)||(22327684-22327749)
chr7 (51-112)||(32896454-32896515)
chr7 (76-116)||(21099788-21099828)
chr7 (60-116)||(42043065-42043121)
chr7 (76-116)||(43539119-43539159)
chr7 (75-114)||(3536268-3536307)
chr7 (73-116)||(5526731-5526774)
chr7 (73-112)||(25251520-25251559)
chr7 (62-109)||(41619396-41619443)
chr7 (60-127)||(42297120-42297187)
chr7 (82-116)||(2391013-2391047)
chr7 (83-117)||(4346666-4346700)
chr7 (83-117)||(4398331-4398365)
chr7 (50-112)||(10236894-10236956)
chr7 (82-112)||(31037664-31037694)
chr7 (62-112)||(38779990-38780040)
chr7 (62-116)||(46185174-46185228)
chr7 (51-116)||(5458061-5458126)
chr7 (83-112)||(9819571-9819600)
chr7 (83-112)||(10721496-10721525)
chr7 (51-116)||(16537526-16537591)
chr7 (51-116)||(16628071-16628136)
chr7 (71-112)||(21164768-21164809)
chr7 (51-116)||(22690026-22690091)
chr7 (59-116)||(27158885-27158942)
chr7 (83-116)||(37307896-37307929)
chr7 (83-116)||(39280840-39280873)
chr7 (63-116)||(40518897-40518950)
chr7 (63-96)||(40854947-40854980)
chr7 (60-113)||(46659394-46659447)
chr7 (64-116)||(5352335-5352387)
chr7 (62-114)||(16971004-16971056)
chr7 (76-116)||(20115597-20115637)
chr7 (83-115)||(29237579-29237611)
chr7 (76-112)||(40187651-40187687)
chr7 (62-114)||(40677188-40677240)
chr7 (68-116)||(48069844-48069892)
[»] chr6 (21 HSPs)
chr6 (51-116)||(29457187-29457252)
chr6 (50-129)||(14515281-14515360)
chr6 (52-116)||(30639417-30639481)
chr6 (52-116)||(12276222-12276286)
chr6 (76-116)||(14918315-14918355)
chr6 (64-116)||(32149144-32149196)
chr6 (73-116)||(135167-135210)
chr6 (51-98)||(9333970-9334017)
chr6 (78-116)||(5008845-5008883)
chr6 (50-96)||(35110080-35110126)
chr6 (59-116)||(8138456-8138513)
chr6 (75-116)||(9581972-9582013)
chr6 (83-116)||(10780129-10780162)
chr6 (83-116)||(32193881-32193914)
chr6 (83-116)||(33938701-33938734)
chr6 (83-116)||(34701153-34701186)
chr6 (60-112)||(331885-331937)
chr6 (60-112)||(1989042-1989093)
chr6 (76-112)||(16390439-16390475)
chr6 (68-112)||(16453344-16453388)
chr6 (76-116)||(35061430-35061470)
[»] chr5 (26 HSPs)
chr5 (51-116)||(21657388-21657453)
chr5 (75-116)||(37054283-37054324)
chr5 (50-113)||(31708135-31708198)
chr5 (62-116)||(31602826-31602880)
chr5 (62-116)||(39143720-39143774)
chr5 (75-116)||(12909180-12909221)
chr5 (71-116)||(20370140-20370185)
chr5 (83-116)||(27721697-27721730)
chr5 (76-116)||(10199025-10199065)
chr5 (73-112)||(15105122-15105161)
chr5 (72-114)||(12216976-12217018)
chr5 (82-116)||(20365493-20365527)
chr5 (62-116)||(36818939-36818993)
chr5 (83-116)||(1669602-1669635)
chr5 (63-116)||(2705518-2705571)
chr5 (83-116)||(5485192-5485225)
chr5 (83-116)||(6489013-6489046)
chr5 (78-111)||(11666014-11666047)
chr5 (83-116)||(15889417-15889450)
chr5 (83-116)||(17861985-17862018)
chr5 (50-111)||(24438558-24438619)
chr5 (83-116)||(31591559-31591592)
chr5 (83-116)||(34436857-34436890)
chr5 (64-116)||(11017182-11017234)
chr5 (76-116)||(13409556-13409596)
chr5 (76-116)||(26409259-26409299)
[»] scaffold1320 (1 HSPs)
scaffold1320 (75-116)||(1773-1814)
[»] chr4 (34 HSPs)
chr4 (75-116)||(25999403-25999444)
chr4 (58-116)||(20403165-20403223)
chr4 (50-112)||(24488432-24488494)
chr4 (76-116)||(22164284-22164324)
chr4 (76-115)||(23160047-23160086)
chr4 (62-112)||(34960158-34960208)
chr4 (62-116)||(36478997-36479051)
chr4 (83-116)||(2649755-2649788)
chr4 (83-116)||(3936633-3936666)
chr4 (83-116)||(7190470-7190503)
chr4 (83-116)||(7282563-7282596)
chr4 (83-116)||(8494993-8495026)
chr4 (75-116)||(10204846-10204887)
chr4 (59-116)||(11286779-11286836)
chr4 (67-116)||(12192497-12192546)
chr4 (83-112)||(13984664-13984693)
chr4 (83-116)||(20799416-20799449)
chr4 (83-116)||(39669518-39669551)
chr4 (62-107)||(46411818-46411863)
chr4 (71-112)||(48824926-48824967)
chr4 (83-116)||(50362161-50362194)
chr4 (60-116)||(10082408-10082464)
chr4 (75-115)||(22411771-22411811)
chr4 (62-114)||(24785463-24785515)
chr4 (62-114)||(24822751-24822803)
chr4 (76-112)||(32923245-32923281)
chr4 (64-116)||(34931423-34931475)
chr4 (60-96)||(34968008-34968044)
chr4 (76-108)||(37872516-37872548)
chr4 (73-109)||(38767046-38767082)
chr4 (72-116)||(44223368-44223412)
chr4 (71-115)||(46434770-46434814)
chr4 (76-112)||(53617844-53617880)
chr4 (76-116)||(54500575-54500615)
[»] chr3 (40 HSPs)
chr3 (59-112)||(38559894-38559947)
chr3 (63-116)||(48688121-48688173)
chr3 (72-116)||(6901465-6901509)
chr3 (52-116)||(30200832-30200896)
chr3 (80-115)||(2151067-2151102)
chr3 (61-116)||(5702178-5702232)
chr3 (53-116)||(35191809-35191872)
chr3 (65-112)||(39100420-39100467)
chr3 (73-116)||(45254237-45254280)
chr3 (58-116)||(7938730-7938788)
chr3 (50-112)||(38573562-38573624)
chr3 (82-116)||(38869539-38869573)
chr3 (62-112)||(53681878-53681928)
chr3 (62-116)||(54230100-54230154)
chr3 (53-115)||(55494696-55494758)
chr3 (83-112)||(1757691-1757720)
chr3 (83-112)||(3176995-3177024)
chr3 (83-116)||(7868728-7868761)
chr3 (83-116)||(10840424-10840457)
chr3 (83-116)||(13800673-13800706)
chr3 (75-116)||(17755127-17755168)
chr3 (83-116)||(18870747-18870780)
chr3 (75-116)||(19056447-19056488)
chr3 (83-116)||(33223874-33223907)
chr3 (83-116)||(35492799-35492832)
chr3 (75-108)||(36690026-36690059)
chr3 (83-116)||(43490439-43490472)
chr3 (71-112)||(43630428-43630469)
chr3 (51-116)||(45096032-45096097)
chr3 (83-116)||(45431954-45431987)
chr3 (75-116)||(48209225-48209266)
chr3 (75-112)||(48517681-48517718)
chr3 (51-116)||(50980041-50980106)
chr3 (51-116)||(51083175-51083240)
chr3 (83-116)||(54020671-54020704)
chr3 (64-116)||(5117214-5117266)
chr3 (76-112)||(7464506-7464542)
chr3 (76-112)||(24145408-24145444)
chr3 (76-116)||(28918905-28918945)
chr3 (81-109)||(54044014-54044042)
[»] chr2 (35 HSPs)
chr2 (51-116)||(30045459-30045524)
chr2 (51-116)||(30050622-30050687)
chr2 (51-116)||(30141666-30141731)
chr2 (62-118)||(25274830-25274886)
chr2 (73-116)||(23782873-23782916)
chr2 (50-116)||(20517028-20517094)
chr2 (67-116)||(41939114-41939163)
chr2 (60-112)||(19549446-19549498)
chr2 (76-116)||(30089055-30089095)
chr2 (76-116)||(30125659-30125699)
chr2 (76-112)||(41555304-41555340)
chr2 (82-117)||(9517030-9517065)
chr2 (73-112)||(25603923-25603962)
chr2 (73-116)||(32957555-32957598)
chr2 (67-113)||(3196569-3196615)
chr2 (50-116)||(30243256-30243322)
chr2 (62-116)||(31397790-31397844)
chr2 (50-116)||(33832658-33832724)
chr2 (83-116)||(3197101-3197134)
chr2 (51-116)||(12124551-12124616)
chr2 (83-116)||(20565097-20565130)
chr2 (55-116)||(22608533-22608594)
chr2 (51-116)||(24393251-24393316)
chr2 (83-116)||(24592868-24592901)
chr2 (83-112)||(25395464-25395493)
chr2 (75-116)||(31476977-31477018)
chr2 (83-116)||(34191330-34191363)
chr2 (63-112)||(35727447-35727496)
chr2 (83-116)||(41668661-41668694)
chr2 (76-116)||(4927464-4927504)
chr2 (76-116)||(7413204-7413244)
chr2 (64-116)||(9842205-9842257)
chr2 (62-114)||(10664492-10664544)
chr2 (76-116)||(28202303-28202343)
chr2 (73-109)||(34364507-34364543)
[»] chr1 (51 HSPs)
chr1 (71-112)||(3573334-3573375)
chr1 (76-116)||(44243879-44243919)
chr1 (52-123)||(7652100-7652171)
chr1 (62-112)||(10841910-10841960)
chr1 (62-116)||(21015968-21016022)
chr1 (51-112)||(34083347-34083408)
chr1 (50-114)||(37045135-37045199)
chr1 (76-116)||(38214003-38214043)
chr1 (51-106)||(11913746-11913801)
chr1 (73-116)||(17201218-17201261)
chr1 (50-112)||(9398402-9398464)
chr1 (70-116)||(13234084-13234130)
chr1 (53-115)||(24236610-24236672)
chr1 (51-113)||(27023646-27023707)
chr1 (50-116)||(30795707-30795773)
chr1 (50-116)||(50372350-50372416)
chr1 (83-112)||(5291110-5291139)
chr1 (75-116)||(5503779-5503820)
chr1 (53-106)||(7996681-7996734)
chr1 (75-116)||(9413804-9413845)
chr1 (50-115)||(9872094-9872159)
chr1 (83-116)||(16533055-16533088)
chr1 (83-116)||(17139539-17139572)
chr1 (75-116)||(18617318-18617359)
chr1 (83-116)||(21400045-21400078)
chr1 (52-117)||(29798107-29798172)
chr1 (75-112)||(30678827-30678864)
chr1 (83-112)||(32497503-32497532)
chr1 (83-112)||(33229704-33229733)
chr1 (59-96)||(35527944-35527981)
chr1 (67-116)||(39251217-39251266)
chr1 (83-116)||(48681955-48681988)
chr1 (76-116)||(2817388-2817428)
chr1 (64-112)||(4770631-4770679)
chr1 (79-115)||(9374389-9374425)
chr1 (83-111)||(12269006-12269034)
chr1 (60-116)||(13054879-13054935)
chr1 (76-116)||(25271778-25271818)
chr1 (64-100)||(31426783-31426819)
chr1 (76-116)||(32030920-32030960)
chr1 (76-112)||(33153895-33153931)
chr1 (71-111)||(35632910-35632950)
chr1 (76-116)||(36371055-36371095)
chr1 (83-111)||(37719859-37719887)
chr1 (76-112)||(39949822-39949858)
chr1 (76-116)||(41926828-41926868)
chr1 (76-116)||(45701334-45701374)
chr1 (73-117)||(46082341-46082385)
chr1 (76-116)||(49432008-49432048)
chr1 (72-100)||(50939259-50939287)
chr1 (83-115)||(51503686-51503718)
[»] scaffold0045 (2 HSPs)
scaffold0045 (60-116)||(63868-63924)
scaffold0045 (60-116)||(71200-71256)
[»] scaffold1149 (1 HSPs)
scaffold1149 (58-116)||(2338-2396)
[»] scaffold0118 (1 HSPs)
scaffold0118 (55-116)||(40004-40065)
[»] scaffold0098 (1 HSPs)
scaffold0098 (83-116)||(5431-5464)
[»] scaffold0072 (1 HSPs)
scaffold0072 (83-116)||(25701-25734)
[»] scaffold0198 (1 HSPs)
scaffold0198 (75-111)||(19250-19286)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-99; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 33445691 - 33445438
Alignment:
Q  1 gacttagatatcgggtatgggttgaccaacgagtacttgttcnnnnnnnggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttc 100  Q
    ||||||||| |||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33445691 gacttagatgtcgggtatgggttgaccaacgagtacttgtttttttttttgtggtgtctgaggttcgaatctcaaaccttgtatatattatgcattgttc 33445592  T
Q  101 ctaccaactgagctaattaagctcacg-ggacaacgagtacttgttctatctcaaaggttttataggacaagaggtattagtttttactcgttaatttat 199  Q
    ||||||||||||||||    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  33445591 ctaccaactgagctaa----gctcacgaggacaacgaatacttgttctatctcaaaggttttataggacaagagatgttagtttttactcgttaatttat 33445496  T
Q  200 atttttactcaaagactcacactccattatatctaaataaaagtcccacacttcacgt 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33445495 atttttactcaaagactcacactccattatatctaaataaaagtcccacacttcacgt 33445438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 1230650 - 1230712
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    ||||||| ||||| || ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  1230650 ggtggtggctgagttttgaacctcaaaccttacatatattatgcattgttcctaccaactgag 1230712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 100
Target Start/End: Complemental strand, 3102380 - 3102330
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttc 100  Q
    |||||||||||||||||||| ||||||||||| ||||||||| ||||||||    
T  3102380 ggtggtgtctgaggttcgaacctcaaaccttacatatattatacattgttc 3102330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 5880973 - 5881038
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| ||||||| |||||||||||||| |||||||||||||||| || || ||||||||||||    
T  5880973 ggtggtgtttgaggtttgaatctcaaaccttgtatatattatgcattg-tcttatcaactgagctaa 5881038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 11104824 - 11104774
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||||||||| | |||||| |||||||||||||||||||||||||||||||    
T  11104824 ggttcgaatcccgaaccttgtatatattatgcattgttcctaccaactgag 11104774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 15167097 - 15167056
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  15167097 aaccttatgtatattatgcattgttcctaccaactgagctaa 15167056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 8020370 - 8020316
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||| ||||| | ||||||| ||||||||||| ||||||||||||||||||||||    
T  8020370 ggtttgaatcccgaaccttacatatattatgcgttgttcctaccaactgagctaa 8020316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 1244695 - 1244760
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| | |||||||| | || ||||| ||||||||||||||||| | |||||||||||||||    
T  1244695 gtggtgtccggggttcgaaccccagaccttgtatatattatgcattgtccttaccaactgagctaa 1244760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 36588108 - 36588149
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  36588108 aaccttacatatattatacattgttcctaccaactgagctaa 36588149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 40919381 - 40919414
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||||||||||||||||||||||||    
T  40919381 atatattatgcattgttcctaccaactgagctaa 40919414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 9071029 - 9070965
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagcta 115  Q
    ||||||||||| ||||||| |||  |||||| ||||||||| |||||| | ||||||||||||||    
T  9071029 gtggtgtctgaagttcgaacctcggaccttacatatattatacattgtccttaccaactgagcta 9070965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Original strand, 3757974 - 3758012
Alignment:
Q  78 cttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  3757974 cttacatatattatgcattgttcctatcaactgagctaa 3758012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 116
Target Start/End: Original strand, 7280684 - 7280718
Alignment:
Q  82 tatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||||||||| ||||||||||    
T  7280684 tatatattatgcattgttcctacccactgagctaa 7280718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 8078096 - 8078146
Alignment:
Q  57 tctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaa 107  Q
    |||||||||||||  ||| |||||| |||||||||||||||||| ||||||    
T  8078096 tctgaggttcgaacatcagaccttacatatattatgcattgttcttaccaa 8078146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Original strand, 8694137 - 8694175
Alignment:
Q  68 aatctcaaaccttatatatattatgcattgttcctacca 106  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  8694137 aatctcaaaccttgcatatattatgcattgttcctacca 8694175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 13284266 - 13284316
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||| ||| ||||||||||||||||||||| |||||||| || ||||||||    
T  13284266 ggtttgaacctcaaaccttatatatattatacattgttcatatcaactgag 13284316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 7433200 - 7433147
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagcta 115  Q
    |||||||||| || |||||| |||||||||||||||| |  |||||||||||||    
T  7433200 ggttcgaatcccagaccttacatatattatgcattgtccaaaccaactgagcta 7433147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 8148417 - 8148482
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| ||||||||||||| | |||||  ||||||||| |||||| | |||||| ||||||||    
T  8148417 gtggtgtccgaggttcgaatcttagaccttgcatatattatacattgtccataccaattgagctaa 8148482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 11709025 - 11708992
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  11709025 atatattatgcattgtccctaccaactgagctaa 11708992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 17704084 - 17704019
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| | |||||| ||||| || |||||  |||||||||||||||| | |||||||||||||||    
T  17704084 gtggtggccgaggtttgaatcacagaccttgcatatattatgcattgtccttaccaactgagctaa 17704019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 32878700 - 32878667
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  32878700 atatattatgcattgttcttaccaactgagctaa 32878667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 39021793 - 39021841
Alignment:
Q  67 gaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||| ||||||||||| |||||||||  ||||||||||||    
T  39021793 gaatctcaaaccttgtatatattatgtattgttcct-gcaactgagctaa 39021841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 39821923 - 39821890
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  39821923 atatattatgcattgtccctaccaactgagctaa 39821890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 44019588 - 44019555
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  44019588 atatattatgcattgttcttaccaactgagctaa 44019555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 10320554 - 10320502
Alignment:
Q  64 ttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| |||| |||||| |||||||||||||| ||| || ||||||||||||    
T  10320554 ttcgaacctcataccttacatatattatgcattattcttatcaactgagctaa 10320502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 117
Target Start/End: Complemental strand, 13105163 - 13105099
Alignment:
Q  53 ggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaat 117  Q
    ||||||||||||||||| | |   ||||  |||||||||||||||| ||||||||||||| ||||    
T  13105163 ggtgtctgaggttcgaaccccggcccttgcatatattatgcattgtccctaccaactgagttaat 13105099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 29908050 - 29908018
Alignment:
Q  83 atatattatgcattgttcctaccaactgagcta 115  Q
    |||||||||||||||| ||||||||||||||||    
T  29908050 atatattatgcattgtccctaccaactgagcta 29908018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 111
Target Start/End: Original strand, 31336829 - 31336857
Alignment:
Q  83 atatattatgcattgttcctaccaactga 111  Q
    |||||||||||||||||||||||||||||    
T  31336829 atatattatgcattgttcctaccaactga 31336857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 41625240 - 41625200
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| |||||||||||||| ||| |||||||||||||||    
T  41625240 accttacatatattatgcattattcataccaactgagctaa 41625200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 39)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 38553885 - 38553824
Alignment:
Q  55 tgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||| |||||||||| | ||||||||| |||||||||||||||||| |||||||||||||||    
T  38553885 tgtccgaggttcgaaccccaaaccttacatatattatgcattgttcttaccaactgagctaa 38553824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 9522972 - 9522918
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| | ||||||||  |||||||||||||||||| |||||||||||||||    
T  9522972 ggttcgaaccccaaaccttgcatatattatgcattgttcataccaactgagctaa 9522918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 22327749 - 22327684
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||  | ||||||| ||| |||||| |||||||||||||||||| ||| |||||||||||    
T  22327749 gtggtgtcttggattcgaatttcagaccttacatatattatgcattgttcttacgaactgagctaa 22327684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 32896454 - 32896515
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    ||||||||||||||||||| | |||| ||| ||||||||||||||||| | | |||||||||    
T  32896454 gtggtgtctgaggttcgaaccccaaatcttgtatatattatgcattgtccttcccaactgag 32896515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 21099788 - 21099828
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  21099788 accttatatatattatgcattgtccataccaactgagctaa 21099828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 42043065 - 42043121
Alignment:
Q  60 gaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| |||||||  |||||| |||||||||||||||| | |||||||||||||||    
T  42043065 gaggtttgaatctcggaccttaaatatattatgcattgtccataccaactgagctaa 42043121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 43539119 - 43539159
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  43539119 accttacatatattatgcattgttcctatcaactgagctaa 43539159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 75 - 114
Target Start/End: Original strand, 3536268 - 3536307
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagct 114  Q
    ||||||| ||||||||||||||||||| ||||||||||||    
T  3536268 aaccttacatatattatgcattgttccaaccaactgagct 3536307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 5526774 - 5526731
Alignment:
Q  73 caaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||| ||||||||||||||||||||| | |||||||||||||||    
T  5526774 caaatcttatatatattatgcattgtccataccaactgagctaa 5526731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 25251559 - 25251520
Alignment:
Q  73 caaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  25251559 caaaccttatatatattatgcattgtttataccaactgag 25251520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 41619396 - 41619443
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaact 109  Q
    |||||||||||| || |||| ||||||||| |||||||||||||||||    
T  41619396 ggttcgaatctcgaatcttacatatattatacattgttcctaccaact 41619443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 42297120 - 42297187
Alignment:
Q  60 gaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaattaagctcacg 127  Q
    |||||| |||||||| ||||| ||||| |||  ||||||  ||| |||||||||||||||||||||||    
T  42297120 gaggtttgaatctcagaccttgtatattttagacattgtctctatcaactgagctaattaagctcacg 42297187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 116
Target Start/End: Complemental strand, 2391047 - 2391013
Alignment:
Q  82 tatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||||||||| |||||||||||||||    
T  2391047 tatatattatgcattgttcttaccaactgagctaa 2391013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 4346700 - 4346666
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaat 117  Q
    |||||||||||||||| ||||||||||||||||||    
T  4346700 atatattatgcattgtccctaccaactgagctaat 4346666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 117
Target Start/End: Complemental strand, 4398365 - 4398331
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaat 117  Q
    |||||||||||||||||| ||||||||||||||||    
T  4398365 atatattatgcattgttcttaccaactgagctaat 4398331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 10236894 - 10236956
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    ||||||||| | |||||||| ||| ||||||  ||| |||||||||||||| |||||||||||    
T  10236894 ggtggtgtccggggttcgaacctcgaaccttgcatacattatgcattgttcttaccaactgag 10236956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 112
Target Start/End: Original strand, 31037664 - 31037694
Alignment:
Q  82 tatatattatgcattgttcctaccaactgag 112  Q
    |||||||||||||||||||||||||||||||    
T  31037664 tatatattatgcattgttcctaccaactgag 31037694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 38780040 - 38779990
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||| ||||| ||||||||| |||||||||  |||||||||||||||||||    
T  38780040 ggtttgaatcccaaaccttacatatattatttattgttcctaccaactgag 38779990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 46185174 - 46185228
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||| ||||||| ||||||  |||| |||||||||||||||||||| ||||||||    
T  46185174 ggtttgaatctcgaaccttgcatattttatgcattgttcctaccaattgagctaa 46185228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 5458061 - 5458126
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||  |||||| ||||| || |||||  |||||||||||||||||| || ||||||||||||    
T  5458061 gtggtgttcgaggtttgaatcccagaccttgcatatattatgcattgttcttatcaactgagctaa 5458126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 112
Target Start/End: Original strand, 9819571 - 9819600
Alignment:
Q  83 atatattatgcattgttcctaccaactgag 112  Q
    ||||||||||||||||||||||||||||||    
T  9819571 atatattatgcattgttcctaccaactgag 9819600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 112
Target Start/End: Original strand, 10721496 - 10721525
Alignment:
Q  83 atatattatgcattgttcctaccaactgag 112  Q
    ||||||||||||||||||||||||||||||    
T  10721496 atatattatgcattgttcctaccaactgag 10721525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 16537526 - 16537591
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| | |||||| ||| | || ||||| ||||||||||||||| | |||||||||||||||||    
T  16537526 gtggtgaccgaggtttgaaccccagaccttgtatatattatgcattatccctaccaactgagctaa 16537591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 16628136 - 16628071
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| | |||||| ||| | || ||||| ||||||||||||||| | |||||||||||||||||    
T  16628136 gtggtgaccgaggtttgaaccccagaccttgtatatattatgcattatccctaccaactgagctaa 16628071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 21164768 - 21164809
Alignment:
Q  71 ctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||||||||||||||||||||||||| | | |||||||||||    
T  21164768 ctcaaaccttatatatattatgcattatccataccaactgag 21164809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 22690026 - 22690091
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| | |||||||| | ||||||||  |||||||||||||| ||| || ||||||||||||    
T  22690026 gtggtgtccggggttcgaaccccaaaccttgcatatattatgcattattcttagcaactgagctaa 22690091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 27158885 - 27158942
Alignment:
Q  59 tgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| ||| ||||||| ||  ||||||||| |||||||| |||||||||||||||    
T  27158885 tgaggtttgaacctcaaactttgcatatattattcattgttcttaccaactgagctaa 27158942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 37307896 - 37307929
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||||||||||| ||||||||||||    
T  37307896 atatattatgcattgttcctatcaactgagctaa 37307929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 39280840 - 39280873
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  39280840 atatattatgcattgttcttaccaactgagctaa 39280873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 40518897 - 40518950
Alignment:
Q  63 gttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||| ||| || || |||||||||||| ||| |||||||||||||||||    
T  40518897 gttcgaatcccaacccctacatatattatgcaatgtccctaccaactgagctaa 40518950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 96
Target Start/End: Complemental strand, 40854980 - 40854947
Alignment:
Q  63 gttcgaatctcaaaccttatatatattatgcatt 96  Q
    ||||||||||||||||||| ||||||||||||||    
T  40854980 gttcgaatctcaaaccttacatatattatgcatt 40854947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 46659394 - 46659447
Alignment:
Q  60 gaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagc 113  Q
    |||||| ||||||||||||||  ||||||||| |||||| | ||||||||||||    
T  46659394 gaggtttgaatctcaaaccttgcatatattatacattgtccataccaactgagc 46659447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 5352387 - 5352335
Alignment:
Q  64 ttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||  ||||| ||||||||||| ||||| | |||||||||||||||    
T  5352387 ttcgaatctcggaccttgtatatattatgtattgtccttaccaactgagctaa 5352335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 16971056 - 16971004
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagct 114  Q
    |||| |||||||| |||||| ||||||||| ||||||||  ||||||||||||    
T  16971056 ggtttgaatctcagaccttacatatattatacattgttctaaccaactgagct 16971004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 20115597 - 20115637
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| ||||| |||||||||| |||||||||||||||||    
T  20115597 accttacatataatatgcattgtccctaccaactgagctaa 20115637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Original strand, 29237579 - 29237611
Alignment:
Q  83 atatattatgcattgttcctaccaactgagcta 115  Q
    |||||||||||||||||| ||||||||||||||    
T  29237579 atatattatgcattgttcttaccaactgagcta 29237611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 40187651 - 40187687
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgag 112  Q
    |||||| |||||||||||||||| |||||||||||||    
T  40187651 accttacatatattatgcattgtccctaccaactgag 40187687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 40677240 - 40677188
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagct 114  Q
    |||| ||||||||||| || ||||||||||| ||||| ||||||| |||||||    
T  40677240 ggtttgaatctcaaactttgtatatattatgtattgtccctaccagctgagct 40677188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 116
Target Start/End: Original strand, 48069844 - 48069892
Alignment:
Q  68 aatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||| ||||||||| |||||||||||||||||| |  ||||||||||||    
T  48069844 aatcccaaaccttacatatattatgcattgttcatgtcaactgagctaa 48069892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 29457252 - 29457187
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| |||| ||| ||| | |||||||||||||||||||||||| |||||||||||||||||||    
T  29457252 gtggtggctgaagtttgaaccacaaaccttatatatattatgcatttttcctaccaactgagctaa 29457187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 14515281 - 14515360
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaattaagctcacggg 129  Q
    |||||||||  ||||||||| |  |||| |||||||||||||||||||| | || |||||||| ||||||||||||||||    
T  14515281 ggtggtgtccaaggttcgaaccctaaactttatatatattatgcattgtccttaacaactgagttaattaagctcacggg 14515360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 30639417 - 30639481
Alignment:
Q  52 tggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| ||| |||||| |||| |||||  |||||||||||||| |||||||||||||||||||    
T  30639417 tggtgtccgagattcgaacctcagaccttgcatatattatgcattattcctaccaactgagctaa 30639481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 116
Target Start/End: Original strand, 12276222 - 12276286
Alignment:
Q  52 tggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| ||| |||||||| | ||| ||  |||||||||||||||||| |||||||||||||||    
T  12276222 tggtgtccgagattcgaatcccgaactttgcatatattatgcattgttcttaccaactgagctaa 12276286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 14918315 - 14918355
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  14918315 accttgtatatattatgcattgtccctaccaactgagctaa 14918355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 32149196 - 32149144
Alignment:
Q  64 ttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| ||| |||||  |||||||||||||||||| |||||||||||||||    
T  32149196 ttcgaatatcagaccttgcatatattatgcattgttcttaccaactgagctaa 32149144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 135210 - 135167
Alignment:
Q  73 caaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| |||||| |||| |||||||||||||||||||||||    
T  135210 caaaccttgtatataatatgtattgttcctaccaactgagctaa 135167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 98
Target Start/End: Original strand, 9333970 - 9334017
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgt 98  Q
    |||||||| |||||||||| | ||||||||| ||||||||||||||||    
T  9333970 gtggtgtccgaggttcgaaccccaaaccttacatatattatgcattgt 9334017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 116
Target Start/End: Complemental strand, 5008883 - 5008845
Alignment:
Q  78 cttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||||||||||| | |||||||||||||||    
T  5008883 cttatatatattatgcattgtccttaccaactgagctaa 5008845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 96
Target Start/End: Complemental strand, 35110126 - 35110080
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcatt 96  Q
    |||||||| || |||||||| ||||||||||| ||||||||||||||    
T  35110126 ggtggtgtttggggttcgaacctcaaaccttacatatattatgcatt 35110080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 8138456 - 8138513
Alignment:
Q  59 tgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| ||| | || |||||| |||||||||||||||||| || ||||||||||||    
T  8138456 tgaggtttgaaccccagaccttacatatattatgcattgttcttatcaactgagctaa 8138513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 9582013 - 9581972
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| ||||| |||||||||||||| ||||||||||||||    
T  9582013 aaccttgtatattttatgcattgttccaaccaactgagctaa 9581972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 10780129 - 10780162
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  10780129 atatattatgcattgtccctaccaactgagctaa 10780162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 32193881 - 32193914
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  32193881 atatattatgcattgttcttaccaactgagctaa 32193914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 33938701 - 33938734
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  33938701 atatattatgcattgttcataccaactgagctaa 33938734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 34701186 - 34701153
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||||||||||||||||||| ||||    
T  34701186 atatattatgcattgttcctaccaactgaactaa 34701153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 331885 - 331937
Alignment:
Q  60 gaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||||| ||||| ||||||||  ||||||||||||||||  ||||||||||||    
T  331885 gaggtttgaatcccaaaccttgcatatattatgcattgtctctaccaactgag 331937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 112
Target Start/End: Original strand, 1989042 - 1989093
Alignment:
Q  60 gaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||||| ||| ||||||||||| ||||||||||||||| || |||||||||||    
T  1989042 gaggtttgaacctcaaaccttacatatattatgcattg-tcataccaactgag 1989093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 16390475 - 16390439
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgag 112  Q
    |||||| |||||||||||||||| |||||||||||||    
T  16390475 accttacatatattatgcattgtccctaccaactgag 16390439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 16453344 - 16453388
Alignment:
Q  68 aatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||| ||||||||| |||||||||| ||||| |||||||||||||    
T  16453344 aatcccaaaccttacatatattatgtattgtccctaccaactgag 16453388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 35061470 - 35061430
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||| ||| |||||||||||||| ||||||||    
T  35061470 accttatatatatcatgtattgttcctaccaattgagctaa 35061430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 21657388 - 21657453
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||||| ||| ||||||||||| |||||||||||||||| ||||| |||||| ||||    
T  21657388 gtggtgtctgaggtttgaacctcaaaccttacatatattatgcattgtccctacaaactgaactaa 21657453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 37054283 - 37054324
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  37054283 aaccttatatatattatgcattgtccctaccaactgagctaa 37054324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 113
Target Start/End: Original strand, 31708135 - 31708198
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagc 113  Q
    ||||||||| |||||||||| | || |||||  |||||||||||||||||| ||||||||||||    
T  31708135 ggtggtgtccgaggttcgaaccccagaccttgcatatattatgcattgttcataccaactgagc 31708198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 31602826 - 31602880
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||| ||||||| ||||||  |||||||||||||||||| |||||||||||||||    
T  31602826 ggtttgaatctcgaaccttgcatatattatgcattgttcataccaactgagctaa 31602880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 39143774 - 39143720
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| ||||||||||| |||||||||||| ||| | |||||||||||||||    
T  39143774 ggttcgaacctcaaaccttacatatattatgcaatgtccataccaactgagctaa 39143720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 12909180 - 12909221
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| |||||||||||||||||| |||||||||||||||    
T  12909180 aaccttacatatattatgcattgttcataccaactgagctaa 12909221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 116
Target Start/End: Original strand, 20370140 - 20370185
Alignment:
Q  71 ctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||| ||||||||||||||| | |||||||||||||||||    
T  20370140 ctcaaaccttgtatatattatgcattatccctaccaactgagctaa 20370185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 27721697 - 27721730
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||||||||||||||||||||||||    
T  27721697 atatattatgcattgttcctaccaactgagctaa 27721730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 10199065 - 10199025
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  10199065 accttatatatattatgcattgtccataccaactgagctaa 10199025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 15105122 - 15105161
Alignment:
Q  73 caaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  15105122 caaaccttatatatattatgcattgtttttaccaactgag 15105161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 12216976 - 12217018
Alignment:
Q  72 tcaaaccttatatatattatgcattgttcctaccaactgagct 114  Q
    ||||||||||||||||||||| |||||  ||||||||||||||    
T  12216976 tcaaaccttatatatattatgtattgtctctaccaactgagct 12217018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 116
Target Start/End: Original strand, 20365493 - 20365527
Alignment:
Q  82 tatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||||| ||||||||||||||    
T  20365493 tatatattatgcattgttccgaccaactgagctaa 20365527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 36818993 - 36818939
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||| || |||||||||||||  ||||| | |||||||||||||||    
T  36818993 ggttcgaatctcagactttatatatattatatattgtccataccaactgagctaa 36818939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 1669602 - 1669635
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  1669602 atatattatgcattgttcttaccaactgagctaa 1669635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 116
Target Start/End: Original strand, 2705518 - 2705571
Alignment:
Q  63 gttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| |||| |||||| |||||||||| ||||||| || ||||||||||||    
T  2705518 gttcgaacctcagaccttacatatattatgtattgttcttatcaactgagctaa 2705571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 5485225 - 5485192
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  5485225 atatattatgcattgtccctaccaactgagctaa 5485192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 6489046 - 6489013
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  6489046 atatattatgcattgtccctaccaactgagctaa 6489013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 11666047 - 11666014
Alignment:
Q  78 cttatatatattatgcattgttcctaccaactga 111  Q
    |||||||||||||||||||||| |||||||||||    
T  11666047 cttatatatattatgcattgtttctaccaactga 11666014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 15889450 - 15889417
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  15889450 atatattatgcattgtccctaccaactgagctaa 15889417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 17862018 - 17861985
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  17862018 atatattatgcattgtccctaccaactgagctaa 17861985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 111
Target Start/End: Complemental strand, 24438619 - 24438558
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactga 111  Q
    ||||||||| ||| |||| ||||   |||||| |||||||||||||||||| ||||||||||    
T  24438619 ggtggtgtccgagtttcgtatcttggaccttacatatattatgcattgttcttaccaactga 24438558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 31591559 - 31591592
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    ||||| ||||||||||||||||||||||||||||    
T  31591559 atataatatgcattgttcctaccaactgagctaa 31591592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 34436890 - 34436857
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  34436890 atatattatgcattgtccctaccaactgagctaa 34436857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 11017234 - 11017182
Alignment:
Q  64 ttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| |||| |||||  |||||||||||||| | |||||||||||||||||    
T  11017234 ttcgaacctcagaccttgcatatattatgcattatccctaccaactgagctaa 11017182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 13409596 - 13409556
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||| ||||||||||||||||||| || ||||||||||||    
T  13409596 accttgtatatattatgcattgttcttatcaactgagctaa 13409556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 26409299 - 26409259
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| |||||||||||||||| | |||||||||||||||    
T  26409299 accttacatatattatgcattgtccataccaactgagctaa 26409259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1320 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold1320
Description:

Target: scaffold1320; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 1773 - 1814
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  1773 aaccttatgtatattatgcattgttcctaccaactgagctaa 1814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 25999444 - 25999403
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  25999444 aaccttatatatattatgcattgtccctaccaactgagctaa 25999403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 20403165 - 20403223
Alignment:
Q  58 ctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||  ||| |||||  ||||||||||||||||||||| ||||||||||||    
T  20403165 ctgaggttcgaacttcagaccttgcatatattatgcattgttcctatcaactgagctaa 20403223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 24488494 - 24488432
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    ||||||||| ||||||| |||||| |||||| |||||||||||||||||   |||||||||||    
T  24488494 ggtggtgtccgaggttcaaatctcgaaccttgtatatattatgcattgtcattaccaactgag 24488432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 22164284 - 22164324
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| ||||||||||||||||||||||||||| ||||||    
T  22164284 accttacatatattatgcattgttcctaccaactaagctaa 22164324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 115
Target Start/End: Complemental strand, 23160086 - 23160047
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagcta 115  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  23160086 accttacatatattatgcattgtccctaccaactgagcta 23160047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 34960158 - 34960208
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||||||| ||| || ||||||||||||||||||||||  |||||||||||    
T  34960158 ggttcgaacctcgaatcttatatatattatgcattgtttataccaactgag 34960208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 36479051 - 36478997
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| ||| ||||||| |||||||||||||||| | ||||||| |||||||    
T  36479051 ggttcgaacctcgaaccttacatatattatgcattgtccataccaacagagctaa 36478997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 2649755 - 2649788
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  2649755 atatattatgcattgtccctaccaactgagctaa 2649788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 3936666 - 3936633
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  3936666 atatattatgcattgttcataccaactgagctaa 3936633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 7190470 - 7190503
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  7190470 atatattatgcattgttcttaccaactgagctaa 7190503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 7282596 - 7282563
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  7282596 atatattatgcattgttcataccaactgagctaa 7282563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 8495026 - 8494993
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  8495026 atatattatgcattgtccctaccaactgagctaa 8494993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 10204887 - 10204846
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| |||||||||||||||| | |||||||||||||||    
T  10204887 aaccttacatatattatgcattgtccataccaactgagctaa 10204846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 11286779 - 11286836
Alignment:
Q  59 tgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| |||||||| |||||  ||||||||||||||||  ||||||||||| ||||    
T  11286779 tgaggtttgaatctcagaccttgcatatattatgcattgtctctaccaactgaactaa 11286836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 12192497 - 12192546
Alignment:
Q  67 gaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||||  |||||||||||||||||| |||||| ||| ||||    
T  12192497 gaatctcaaaccttgcatatattatgcattgttcataccaattgaactaa 12192546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 112
Target Start/End: Original strand, 13984664 - 13984693
Alignment:
Q  83 atatattatgcattgttcctaccaactgag 112  Q
    ||||||||||||||||||||||||||||||    
T  13984664 atatattatgcattgttcctaccaactgag 13984693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 20799416 - 20799449
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  20799416 atatattatgcattgtccctaccaactgagctaa 20799449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 39669518 - 39669551
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||| |||||||||||||||||||||    
T  39669518 atatattatgcaatgttcctaccaactgagctaa 39669551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 46411818 - 46411863
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaa 107  Q
    |||| |||||||||||||||||||| |||| |||||||| ||||||    
T  46411818 ggtttgaatctcaaaccttatatatgttatacattgttcataccaa 46411863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 48824926 - 48824967
Alignment:
Q  71 ctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||| ||||||||||||||||||| ||||| |||||||||||    
T  48824926 ctcagaccttatatatattatgcactgttcttaccaactgag 48824967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 50362161 - 50362194
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  50362161 atatattatgcattgtccctaccaactgagctaa 50362194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 10082464 - 10082408
Alignment:
Q  60 gaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| ||| |||| | ||| ||||||||||| ||||| |||||||||||||||||    
T  10082464 gaggtttgaacctcatatcttgtatatattatgtattgtccctaccaactgagctaa 10082408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 22411811 - 22411771
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagcta 115  Q
    ||||||| |||||||||||||||| | ||||||||||||||    
T  22411811 aaccttacatatattatgcattgtccataccaactgagcta 22411771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 24785463 - 24785515
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagct 114  Q
    |||||||| | || ||||| ||||||||||||||||| | |||||||||||||    
T  24785463 ggttcgaaccccagaccttgtatatattatgcattgtccttaccaactgagct 24785515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 114
Target Start/End: Complemental strand, 24822803 - 24822751
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagct 114  Q
    |||||||| | || ||||| ||||||||||||||||| | |||||||||||||    
T  24822803 ggttcgaaccccagaccttgtatatattatgcattgtccttaccaactgagct 24822751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 32923245 - 32923281
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgag 112  Q
    |||||| |||||||||||||||||| |||||||||||    
T  32923245 accttacatatattatgcattgttcataccaactgag 32923281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 34931423 - 34931475
Alignment:
Q  64 ttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||  |||||||||||||| |||||||||||| ||  |||||||||||    
T  34931423 ttcgaatcctaaaccttatatatagtatgcattgttcatattaactgagctaa 34931475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 34968008 - 34968044
Alignment:
Q  60 gaggttcgaatctcaaaccttatatatattatgcatt 96  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  34968008 gaggttcgaacctcaaaccttacatatattatgcatt 34968044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 37872516 - 37872548
Alignment:
Q  76 accttatatatattatgcattgttcctaccaac 108  Q
    ||||||||||||||||||||||| |||||||||    
T  37872516 accttatatatattatgcattgtccctaccaac 37872548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 38767046 - 38767082
Alignment:
Q  73 caaaccttatatatattatgcattgttcctaccaact 109  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  38767046 caaaccttacatatgttatgcattgttcctaccaact 38767082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 44223412 - 44223368
Alignment:
Q  72 tcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||| |||||||||||||||||| | |||| ||||||||    
T  44223412 tcaaaccttacatatattatgcattgttctttccaattgagctaa 44223368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 46434770 - 46434814
Alignment:
Q  71 ctcaaaccttatatatattatgcattgttcctaccaactgagcta 115  Q
    ||||||||||| |||||||||||||||| | || |||||||||||    
T  46434770 ctcaaaccttacatatattatgcattgtccttatcaactgagcta 46434814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 53617880 - 53617844
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgag 112  Q
    |||||| |||||||||||||||| |||||||||||||    
T  53617880 accttaaatatattatgcattgtccctaccaactgag 53617844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 54500615 - 54500575
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| ||||||||||||||||  ||||||||||||||||    
T  54500615 accttacatatattatgcattgtctctaccaactgagctaa 54500575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 112
Target Start/End: Original strand, 38559894 - 38559947
Alignment:
Q  59 tgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||||||| || |||| ||||||||||||||||||||||||| |||||||||||    
T  38559894 tgaggttcaaacctcagaccttatatatattatgcattgttcataccaactgag 38559947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 48688173 - 48688121
Alignment:
Q  63 gttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| ||||||||||| ||||||||||||||| || |||||||||||||||    
T  48688173 gttcgaacctcaaaccttacatatattatgcattg-tcataccaactgagctaa 48688121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 6901465 - 6901509
Alignment:
Q  72 tcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||  ||||||||| ||||||||||||||||||||||||    
T  6901465 tcaaaccttgcatatattatacattgttcctaccaactgagctaa 6901509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 30200896 - 30200832
Alignment:
Q  52 tggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| | |||||||| ||||||||||  |||||||||||||||| | || ||||||||||||    
T  30200896 tggtgtccggggttcgaacctcaaaccttgcatatattatgcattgtccttagcaactgagctaa 30200832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 115
Target Start/End: Complemental strand, 2151102 - 2151067
Alignment:
Q  80 tatatatattatgcattgttcctaccaactgagcta 115  Q
    ||||||||||||||||||| ||||||||||||||||    
T  2151102 tatatatattatgcattgtccctaccaactgagcta 2151067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 116
Target Start/End: Original strand, 5702178 - 5702232
Alignment:
Q  61 aggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||| ||||||||||  ||||||||||||||| || |||||||||||||||    
T  5702178 aggttcgaacctcaaaccttgcatatattatgcattg-tcttaccaactgagctaa 5702232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 116
Target Start/End: Original strand, 35191809 - 35191872
Alignment:
Q  53 ggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| |||||||| | || |||||  |||||||||||||||| | |||||||||||||||    
T  35191809 ggtgtctggggttcgaaccccagaccttgcatatattatgcattgtccttaccaactgagctaa 35191872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 39100420 - 39100467
Alignment:
Q  65 tcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    ||||| |||||||||| ||||||||||||||||||| || ||||||||    
T  39100420 tcgaacctcaaaccttgtatatattatgcattgttcttatcaactgag 39100467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 45254280 - 45254237
Alignment:
Q  73 caaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||| |||||||||||||||| | |||||||||||||||    
T  45254280 caaaccttacatatattatgcattgtccttaccaactgagctaa 45254237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 7938788 - 7938730
Alignment:
Q  58 ctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||| |||||| | || ||||| ||||||||||||||||||| |||||||||| ||||    
T  7938788 ctgagattcgaaccccagaccttgtatatattatgcattgttcataccaactgaactaa 7938730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 38573562 - 38573624
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    ||||||||| | ||||||||||  | ||||| ||||||||||||||||||| || ||||||||    
T  38573562 ggtggtgtccggggttcgaatcctagaccttgtatatattatgcattgttcttatcaactgag 38573624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 116
Target Start/End: Original strand, 38869539 - 38869573
Alignment:
Q  82 tatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||||||||| |||||||||||||||    
T  38869539 tatatattatgcattgttcttaccaactgagctaa 38869573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 53681878 - 53681928
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||||||| |||||| |||  |||||||||||||||||| |||||||||||    
T  53681878 ggttcgaacctcaaatcttgcatatattatgcattgttcttaccaactgag 53681928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 54230100 - 54230154
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| | ||||||||  |||||||||||||||| | |||||||||||||||    
T  54230100 ggttcgaaccccaaaccttgcatatattatgcattgtccttaccaactgagctaa 54230154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Complemental strand, 55494758 - 55494696
Alignment:
Q  53 ggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagcta 115  Q
    ||||| ||||||||||| | ||  ||||| |||||||||||||||| |||||||| |||||||    
T  55494758 ggtgtatgaggttcgaaccccagtccttacatatattatgcattgtccctaccaattgagcta 55494696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 112
Target Start/End: Original strand, 1757691 - 1757720
Alignment:
Q  83 atatattatgcattgttcctaccaactgag 112  Q
    ||||||||||||||||||||||||||||||    
T  1757691 atatattatgcattgttcctaccaactgag 1757720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 112
Target Start/End: Original strand, 3176995 - 3177024
Alignment:
Q  83 atatattatgcattgttcctaccaactgag 112  Q
    ||||||||||||||||||||||||||||||    
T  3176995 atatattatgcattgttcctaccaactgag 3177024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 7868761 - 7868728
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  7868761 atatattatgcattgttcttaccaactgagctaa 7868728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 10840457 - 10840424
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  10840457 atatattatgcattgttcataccaactgagctaa 10840424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 13800706 - 13800673
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  13800706 atatattatgcattgttcttaccaactgagctaa 13800673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 17755168 - 17755127
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| |||||||||| |||||||||| ||||||||||||    
T  17755168 aaccttacatatattatgtattgttcctatcaactgagctaa 17755127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 18870747 - 18870780
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  18870747 atatattatgcattgtccctaccaactgagctaa 18870780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 19056488 - 19056447
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| |||||||||| |||||||||| ||||||||||||    
T  19056488 aaccttacatatattatgtattgttcctatcaactgagctaa 19056447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 33223907 - 33223874
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||||||| ||||||||||||||||    
T  33223907 atatattatgcattgtttctaccaactgagctaa 33223874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 35492832 - 35492799
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  35492832 atatattatgcattgttcttaccaactgagctaa 35492799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 108
Target Start/End: Complemental strand, 36690059 - 36690026
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaac 108  Q
    ||||||| ||||||||||||||||||||||||||    
T  36690059 aaccttacatatattatgcattgttcctaccaac 36690026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 43490439 - 43490472
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  43490439 atatattatgcattgttcataccaactgagctaa 43490472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 43630428 - 43630469
Alignment:
Q  71 ctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    ||||||||||| |||||||||||||||||| |||||| ||||    
T  43630428 ctcaaaccttacatatattatgcattgttcataccaattgag 43630469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 45096097 - 45096032
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||| |||||||| | || |||||  |||||||||||||||| | || ||||||||||||    
T  45096097 gtggtgtctggggttcgaaccacagaccttgcatatattatgcattgtccttatcaactgagctaa 45096032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 45431987 - 45431954
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  45431987 atatattatgcattgtccctaccaactgagctaa 45431954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 48209225 - 48209266
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| ||||| |||| ||||||||||||    
T  48209225 aaccttatatatattatgtattgtccctatcaactgagctaa 48209266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 48517718 - 48517681
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||||| |||||||||||||||||||||| ||||||||    
T  48517718 aaccttgtatatattatgcattgttcctatcaactgag 48517681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 50980041 - 50980106
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| ||||| || ||||| || ||||||||||||||||||||| | | ||| |||||||||||    
T  50980041 gtggtgactgagatttgaatcccagaccttatatatattatgcattatccatactaactgagctaa 50980106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 51083175 - 51083240
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| ||||| || ||||| || ||||||||||||||||||||| | | ||| |||||||||||    
T  51083175 gtggtgactgagatttgaatcccagaccttatatatattatgcattatccatactaactgagctaa 51083240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 54020671 - 54020704
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||||||||||||||||| ||||||    
T  54020671 atatattatgcattgttcctaccaactaagctaa 54020704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 5117266 - 5117214
Alignment:
Q  64 ttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| ||||||||||| |||||||||| ||||| | || ||||||||||||    
T  5117266 ttcgaacctcaaaccttacatatattatgtattgtccttatcaactgagctaa 5117214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 7464506 - 7464542
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgag 112  Q
    |||||| |||||||||||||||| |||||||||||||    
T  7464506 accttacatatattatgcattgtccctaccaactgag 7464542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 24145444 - 24145408
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgag 112  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  24145444 accttgtatatattatgcattgtccctaccaactgag 24145408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 28918905 - 28918945
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| |||||||||||||||| ||||||||| |||||||    
T  28918905 accttacatatattatgcattgtacctaccaaccgagctaa 28918945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 109
Target Start/End: Original strand, 54044014 - 54044042
Alignment:
Q  81 atatatattatgcattgttcctaccaact 109  Q
    |||||||||||||||||||||||||||||    
T  54044014 atatatattatgcattgttcctaccaact 54044042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 30045524 - 30045459
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| | |||||| ||||||| |||||| ||||||||||||||||| |||||||| ||||||||    
T  30045524 gtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtccctaccaattgagctaa 30045459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 30050687 - 30050622
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| | |||||| ||||||| |||||| ||||||||||||||||| |||||||| ||||||||    
T  30050687 gtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtccctaccaattgagctaa 30050622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 30141731 - 30141666
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| | |||||| ||||||| |||||| ||||||||||||||||| |||||||| ||||||||    
T  30141731 gtggtggccgaggtttgaatctcgaaccttgtatatattatgcattgtccctaccaattgagctaa 30141666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 25274830 - 25274886
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaatt 118  Q
    |||||||| | || |||||| |||||||||||||||||| |||||||||||||||||    
T  25274830 ggttcgaaccccagaccttacatatattatgcattgttcttaccaactgagctaatt 25274886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 116
Target Start/End: Complemental strand, 23782916 - 23782873
Alignment:
Q  73 caaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||| |||||||||||||||||||||||||| |||||||    
T  23782916 caaaccttaaatatattatgcattgttcctaccaacagagctaa 23782873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 20517094 - 20517028
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||   |||||||| || | |||| |||||||||||||||||| |||||||||||||||    
T  20517094 ggtggtgtctggaattcgaatcccagaacttacatatattatgcattgttcttaccaactgagctaa 20517028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 41939114 - 41939163
Alignment:
Q  67 gaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||||| |||||||||||||| | |||||||||| ||||||    
T  41939114 gaatctcaaaccttacatatattatgcattatccctaccaactaagctaa 41939163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 19549498 - 19549446
Alignment:
Q  60 gaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    ||||||||||||||| |||||  |||||||||||||||||| ||||| |||||    
T  19549498 gaggttcgaatctcagaccttgcatatattatgcattgttcataccagctgag 19549446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 30089095 - 30089055
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  30089095 accttgtatatattatgcattgtccctaccaactgagctaa 30089055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 30125699 - 30125659
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||| ||||||||||||||||| |||||||||||||||||    
T  30125699 accttgtatatattatgcattgtccctaccaactgagctaa 30125659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 41555340 - 41555304
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgag 112  Q
    ||||||||| |||||||||||||||||||||||||||    
T  41555340 accttatatgtattatgcattgttcctaccaactgag 41555304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 117
Target Start/End: Original strand, 9517030 - 9517065
Alignment:
Q  82 tatatattatgcattgttcctaccaactgagctaat 117  Q
    ||||||||||||||||||| ||||||||||||||||    
T  9517030 tatatattatgcattgttcataccaactgagctaat 9517065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 112
Target Start/End: Original strand, 25603923 - 25603962
Alignment:
Q  73 caaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||||||||||||||||||||||||| |||| ||||||||    
T  25603923 caaaccttatatatattatgcattgtccctatcaactgag 25603962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 32957555 - 32957598
Alignment:
Q  73 caaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||| |||||||||||||||||| ||||||| |||||||    
T  32957555 caaaccttacatatattatgcattgttcataccaaccgagctaa 32957598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 113
Target Start/End: Complemental strand, 3196615 - 3196569
Alignment:
Q  67 gaatctcaaaccttatatatattatgcattgttcctaccaactgagc 113  Q
    ||||||| ||||||| |||||||||||||||||| || |||||||||    
T  3196615 gaatctcgaaccttacatatattatgcattgttcatatcaactgagc 3196569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 30243322 - 30243256
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| | |||||| ||| | | |||||| |||||||||||||||||  ||||||||||||||||    
T  30243322 ggtggtggccgaggtttgaaccccgaaccttgtatatattatgcattgtctctaccaactgagctaa 30243256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 31397790 - 31397844
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||||||  |||||| |||| ||||||||||| |||||||| ||||||||    
T  31397790 ggttcgaatctcggaccttacatattttatgcattgtccctaccaattgagctaa 31397844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 33832658 - 33832724
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||  |||||||||||| || ||| ||||||||||||||||   ||||||| |||||||    
T  33832658 ggtggtgtctggagttcgaatctcagacattacatatattatgcattgtcgttaccaaccgagctaa 33832724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 3197101 - 3197134
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  3197101 atatattatgcattgtccctaccaactgagctaa 3197134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 12124616 - 12124551
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| ||||||||||| | |  |||||  |||||||||||||||| | |||||||||||||||    
T  12124616 gtggtgtttgaggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaa 12124551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 20565097 - 20565130
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  20565097 atatattatgcattgtccctaccaactgagctaa 20565130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 22608594 - 22608533
Alignment:
Q  55 tgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| |||| ||| |||| |||||  ||||||||||||||||  ||||||||||||||||    
T  22608594 tgtctggggtttgaacctcataccttgcatatattatgcattgtctctaccaactgagctaa 22608533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 24393316 - 24393251
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| | |||||||| |||| |||||  |||||||||||||||| | || ||||||||||||    
T  24393316 gtggtgtccggggttcgaacctcagaccttgcatatattatgcattgtccttaacaactgagctaa 24393251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 24592868 - 24592901
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  24592868 atatattatgcattgtccctaccaactgagctaa 24592901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 112
Target Start/End: Original strand, 25395464 - 25395493
Alignment:
Q  83 atatattatgcattgttcctaccaactgag 112  Q
    ||||||||||||||||||||||||||||||    
T  25395464 atatattatgcattgttcctaccaactgag 25395493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 31477018 - 31476977
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| ||||||||||||||| | |||||||||||||||||    
T  31477018 aaccttgtatatattatgcattctccctaccaactgagctaa 31476977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 34191330 - 34191363
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  34191330 atatattatgcattgtccctaccaactgagctaa 34191363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 35727496 - 35727447
Alignment:
Q  63 gttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    ||||||| | ||||||||  |||||||||||||||||| |||||||||||    
T  35727496 gttcgaaccccaaaccttgcatatattatgcattgttcttaccaactgag 35727447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 41668694 - 41668661
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  41668694 atatattatgcattgttcataccaactgagctaa 41668661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 4927464 - 4927504
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| ||||||||||| |||| |||||||||||||||||    
T  4927464 accttacatatattatgctttgtccctaccaactgagctaa 4927504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 7413204 - 7413244
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||| ||||||||||||||||| | |||||||||||||||    
T  7413204 accttgtatatattatgcattgtccttaccaactgagctaa 7413244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 9842205 - 9842257
Alignment:
Q  64 ttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| | ||||||||  |||| ||||||||||| |||||||||||||||||    
T  9842205 ttcgaaccccaaaccttgcatattttatgcattgtccctaccaactgagctaa 9842257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 10664492 - 10664544
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagct 114  Q
    |||||||| ||||||| || ||||||||||||||| ||| |||||| ||||||    
T  10664492 ggttcgaacctcaaactttgtatatattatgcattattcttaccaagtgagct 10664544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 28202343 - 28202303
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| |||||||||||||||| |||| ||||||||||||    
T  28202343 accttacatatattatgcattgtccctatcaactgagctaa 28202303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 109
Target Start/End: Original strand, 34364507 - 34364543
Alignment:
Q  73 caaaccttatatatattatgcattgttcctaccaact 109  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  34364507 caaaccttgtatatattatgcattattcctaccaact 34364543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 51)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 3573334 - 3573375
Alignment:
Q  71 ctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    ||||||||||| ||||||||||||||||||||||||||||||    
T  3573334 ctcaaaccttacatatattatgcattgttcctaccaactgag 3573375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 44243919 - 44243879
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| ||||||||||||||||||||||||||||||||||    
T  44243919 accttacatatattatgcattgttcctaccaactgagctaa 44243879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 123
Target Start/End: Complemental strand, 7652171 - 7652100
Alignment:
Q  52 tggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaattaagct 123  Q
    ||||||||||||||||||  ||| |||||| |||||||||| ||||| | |||||||||| |||| ||||||    
T  7652171 tggtgtctgaggttcgaacttcagaccttacatatattatgtattgtccataccaactgaactaactaagct 7652100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 10841960 - 10841910
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||| |||||||||||||||||||||||||||||||| | || ||||||||    
T  10841960 ggtttgaatctcaaaccttatatatattatgcattgtccatatcaactgag 10841910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 116
Target Start/End: Complemental strand, 21016022 - 21015968
Alignment:
Q  62 ggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| | | ||||||| |||||||||||||||||| |||||||||||||||    
T  21016022 ggttcgaaccccgaaccttacatatattatgcattgttcttaccaactgagctaa 21015968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 112
Target Start/End: Complemental strand, 34083408 - 34083347
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||||| ||| |||||||| | ||||||||| |||||||||||||||||| ||||| |||||    
T  34083408 gtggtggctggggttcgaaccccaaaccttacatatattatgcattgttcttaccatctgag 34083347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Original strand, 37045135 - 37045199
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagct 114  Q
    ||||||||||| |||||||| |    |||||  ||||||||||||||||||||||||||||||||    
T  37045135 ggtggtgtctggggttcgaaccctggaccttgcatatattatgcattgttcctaccaactgagct 37045199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 38214003 - 38214043
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||| |||||||||||    
T  38214003 accttatatatattatacattgttcctactaactgagctaa 38214043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 51 - 106
Target Start/End: Complemental strand, 11913801 - 11913746
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctacca 106  Q
    |||||| | |||||| ||||| | |||||| |||||||||||||||||||||||||    
T  11913801 gtggtgaccgaggtttgaatcccgaaccttgtatatattatgcattgttcctacca 11913746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 17201218 - 17201261
Alignment:
Q  73 caaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||||| |||||||||| ||||| |||||||||||||||||    
T  17201218 caaaccttaaatatattatgtattgtccctaccaactgagctaa 17201261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 9398402 - 9398464
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||| |||||| |||||||| | || |||||| |||||| ||||||||||| |||||||||||    
T  9398402 ggtgttgtctggggttcgaaccccagaccttacatatatcatgcattgttcttaccaactgag 9398464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 13234130 - 13234084
Alignment:
Q  70 tctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||| |||||  ||||||||||| ||||||||||||||||||||||    
T  13234130 tctcagaccttgcatatattatgcgttgttcctaccaactgagctaa 13234084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 115
Target Start/End: Original strand, 24236610 - 24236672
Alignment:
Q  53 ggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagcta 115  Q
    |||||| |||||||||| | || ||||| || |||||||||||||| | ||||||||||||||    
T  24236610 ggtgtcagaggttcgaaccccagaccttgtaaatattatgcattgtccttaccaactgagcta 24236672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 113
Target Start/End: Original strand, 27023646 - 27023707
Alignment:
Q  51 gtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagc 113  Q
    ||||||||||||||| ||| | | ||||||  |||||||||||||||||| ||||||||||||    
T  27023646 gtggtgtctgaggtttgaacc-cgaaccttgcatatattatgcattgttcttaccaactgagc 27023707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Complemental strand, 30795773 - 30795707
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| | ||||||||| ||   |||||  |||||||||||||||||| |||||||||||||||    
T  30795773 ggtggtgtttaaggttcgaaccttggaccttgcatatattatgcattgttcttaccaactgagctaa 30795707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 116
Target Start/End: Original strand, 50372350 - 50372416
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||  ||||||| ||| |||| |||| |||||||||||||||||||  || ||||||||||||    
T  50372350 ggtggtggttgaggtttgaacctcagacctgatatatattatgcattgtttatatcaactgagctaa 50372416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 112
Target Start/End: Original strand, 5291110 - 5291139
Alignment:
Q  83 atatattatgcattgttcctaccaactgag 112  Q
    ||||||||||||||||||||||||||||||    
T  5291110 atatattatgcattgttcctaccaactgag 5291139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 5503779 - 5503820
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| ||||| |||||||||||| ||||||||||||||||    
T  5503779 aaccttgtatattttatgcattgtttctaccaactgagctaa 5503820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 7996681 - 7996734
Alignment:
Q  53 ggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctacca 106  Q
    |||||| |||||| ||| ||||||| ||| ||||||||||||||||| ||||||    
T  7996681 ggtgtccgaggtttgaacctcaaactttacatatattatgcattgtttctacca 7996734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 9413845 - 9413804
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||||| |||||||||||||||||| |||||||||| ||||    
T  9413845 aaccttacatatattatgcattgttcttaccaactgaactaa 9413804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 50 - 115
Target Start/End: Original strand, 9872094 - 9872159
Alignment:
Q  50 ggtggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagcta 115  Q
    |||| |||||| |||||||| | ||||||||  |||||||||||||| | | ||||||||||||||    
T  9872094 ggtgctgtctggggttcgaaccgcaaaccttgcatatattatgcattatccttaccaactgagcta 9872159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 16533055 - 16533088
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||||||||||| |||||||    
T  16533055 atatattatgcattgttcctaccaaccgagctaa 16533088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 17139539 - 17139572
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  17139539 atatattatgcattgtccctaccaactgagctaa 17139572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 116
Target Start/End: Complemental strand, 18617359 - 18617318
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||| ||||||||||| || ||||||||||||    
T  18617359 aaccttatatatatgatgcattgttcttatcaactgagctaa 18617318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 21400045 - 21400078
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||| |||||||||||||||||    
T  21400045 atatattatgcattgtccctaccaactgagctaa 21400078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 117
Target Start/End: Original strand, 29798107 - 29798172
Alignment:
Q  52 tggtgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaat 117  Q
    |||||||||  ||||||| | || |||||| |||||||||||||||||| || | |||||||||||    
T  29798107 tggtgtctggtgttcgaaccccagaccttacatatattatgcattgttcttatcgactgagctaat 29798172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 30678827 - 30678864
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactgag 112  Q
    ||||||| |||||||||||||||| |||||||||||||    
T  30678827 aaccttacatatattatgcattgtccctaccaactgag 30678864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 112
Target Start/End: Original strand, 32497503 - 32497532
Alignment:
Q  83 atatattatgcattgttcctaccaactgag 112  Q
    ||||||||||||||||||||||||||||||    
T  32497503 atatattatgcattgttcctaccaactgag 32497532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 112
Target Start/End: Original strand, 33229704 - 33229733
Alignment:
Q  83 atatattatgcattgttcctaccaactgag 112  Q
    ||||||||||||||||||||||||||||||    
T  33229704 atatattatgcattgttcctaccaactgag 33229733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 35527981 - 35527944
Alignment:
Q  59 tgaggttcgaatctcaaaccttatatatattatgcatt 96  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  35527981 tgaggttcgaaccccaaaccttatatatattatgcatt 35527944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 39251217 - 39251266
Alignment:
Q  67 gaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| || ||| ||||||||||| |||||||||||||||| |||||    
T  39251217 gaatctcagactttacatatattatgcgttgttcctaccaactgcgctaa 39251266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Original strand, 48681955 - 48681988
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  48681955 atatattatgcattgttcataccaactgagctaa 48681988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 2817388 - 2817428
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| |||||||||||||||| | |||||||||||||||    
T  2817388 accttacatatattatgcattgtccttaccaactgagctaa 2817428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 112
Target Start/End: Original strand, 4770631 - 4770679
Alignment:
Q  64 ttcgaatctcaaaccttatatatattatgcattgttcctaccaactgag 112  Q
    |||||| |||| ||||||||||||| ||||||||||| || ||||||||    
T  4770631 ttcgaacctcagaccttatatatatcatgcattgttcatatcaactgag 4770679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 9374425 - 9374389
Alignment:
Q  79 ttatatatattatgcattgttcctaccaactgagcta 115  Q
    |||||||||||||||||||| |||| |||||||||||    
T  9374425 ttatatatattatgcattgtccctatcaactgagcta 9374389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 111
Target Start/End: Original strand, 12269006 - 12269034
Alignment:
Q  83 atatattatgcattgttcctaccaactga 111  Q
    |||||||||||||||||||||||||||||    
T  12269006 atatattatgcattgttcctaccaactga 12269034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 13054935 - 13054879
Alignment:
Q  60 gaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||| |||  |||||  |||||||||||||||| |||||||||| ||||||    
T  13054935 gaggttcgaacctccgaccttgcatatattatgcattgtccctaccaactaagctaa 13054879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 25271778 - 25271818
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| |||||||||||||||||| |||||||||| ||||    
T  25271778 accttacatatattatgcattgttcttaccaactgaactaa 25271818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Complemental strand, 31426819 - 31426783
Alignment:
Q  64 ttcgaatctcaaaccttatatatattatgcattgttc 100  Q
    |||||| |||||||||||||||| |||||||||||||    
T  31426819 ttcgaacctcaaaccttatatattttatgcattgttc 31426783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 32030920 - 32030960
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    ||||| ||||||||||||||||| |||| ||||||||||||    
T  32030920 accttgtatatattatgcattgtccctaacaactgagctaa 32030960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 33153895 - 33153931
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgag 112  Q
    |||||| |||||||||||||||| |||||||||||||    
T  33153895 accttacatatattatgcattgtccctaccaactgag 33153931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 35632950 - 35632910
Alignment:
Q  71 ctcaaaccttatatatattatgcattgttcctaccaactga 111  Q
    |||||||||||||||||||||||||||| | || |||||||    
T  35632950 ctcaaaccttatatatattatgcattgtccatatcaactga 35632910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 36371055 - 36371095
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| ||||||||||||||||  ||||||||||||||||    
T  36371055 accttacatatattatgcattgtctctaccaactgagctaa 36371095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 111
Target Start/End: Complemental strand, 37719887 - 37719859
Alignment:
Q  83 atatattatgcattgttcctaccaactga 111  Q
    |||||||||||||||||||||||||||||    
T  37719887 atatattatgcattgttcctaccaactga 37719859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 39949858 - 39949822
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgag 112  Q
    ||||| ||||||||||||||||||| |||||||||||    
T  39949858 accttgtatatattatgcattgttcttaccaactgag 39949822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 41926868 - 41926828
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| |||||||||||||||| | |||||||||||||||    
T  41926868 accttacatatattatgcattgtccttaccaactgagctaa 41926828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Complemental strand, 45701374 - 45701334
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| |||| ||||||||||||| |||||||||||||||    
T  45701374 accttacatattttatgcattgttcataccaactgagctaa 45701334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 117
Target Start/End: Complemental strand, 46082385 - 46082341
Alignment:
Q  73 caaaccttatatatattatgcattgttcctaccaactgagctaat 117  Q
    ||||||||| ||||||||||||||||||||  |||||||| ||||    
T  46082385 caaaccttacatatattatgcattgttcctttcaactgagttaat 46082341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 116
Target Start/End: Original strand, 49432008 - 49432048
Alignment:
Q  76 accttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| |||||||||||||| ||||||||||| |||||||    
T  49432008 accttacatatattatgcattattcctaccaaccgagctaa 49432048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 50939287 - 50939259
Alignment:
Q  72 tcaaaccttatatatattatgcattgttc 100  Q
    |||||||||||||||||||||||||||||    
T  50939287 tcaaaccttatatatattatgcattgttc 50939259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 51503718 - 51503686
Alignment:
Q  83 atatattatgcattgttcctaccaactgagcta 115  Q
    |||||||||||||||| ||||||||||||||||    
T  51503718 atatattatgcattgtccctaccaactgagcta 51503686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 63924 - 63868
Alignment:
Q  60 gaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| ||| ||||||| || |||||||||| |||||| |||||||||||||||||    
T  63924 gaggtttgaacctcaaactttgtatatattatacattgtccctaccaactgagctaa 63868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 116
Target Start/End: Complemental strand, 71256 - 71200
Alignment:
Q  60 gaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||| ||| ||||||| || |||||||||| |||||| |||||||||||||||||    
T  71256 gaggtttgaacctcaaactttgtatatattatacattgtccctaccaactgagctaa 71200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1149 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 2396 - 2338
Alignment:
Q  58 ctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||| ||| | ||||||||  |||||||||||||||| ||||||||| |||||||    
T  2396 ctgaggtttgaaccccaaaccttgcatatattatgcattgtccctaccaaccgagctaa 2338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 40065 - 40004
Alignment:
Q  55 tgtctgaggttcgaatctcaaaccttatatatattatgcattgttcctaccaactgagctaa 116  Q
    |||| |||||| ||| ||| ||||||  |||||||||||||||| | |||||||||||||||    
T  40065 tgtccgaggtttgaacctctaaccttgcatatattatgcattgtccataccaactgagctaa 40004  T

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Target: scaffold0098 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 5464 - 5431
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  5464 atatattatgcattgttcttaccaactgagctaa 5431  T

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Target: scaffold0072 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 116
Target Start/End: Complemental strand, 25734 - 25701
Alignment:
Q  83 atatattatgcattgttcctaccaactgagctaa 116  Q
    |||||||||||||||||| |||||||||||||||    
T  25734 atatattatgcattgttcttaccaactgagctaa 25701  T

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Target: scaffold0198 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0198
Description:

Target: scaffold0198; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 19286 - 19250
Alignment:
Q  75 aaccttatatatattatgcattgttcctaccaactga 111  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  19286 aaccttgtatattttatgcattgttcctaccaactga 19250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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