View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11624_low_20 (Length: 268)

Name: NF11624_low_20
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11624_low_20
NF11624_low_20
[»] chr5 (2 HSPs)
chr5 (187-252)||(27762794-27762859)
chr5 (185-261)||(31546703-31546779)
[»] chr6 (1 HSPs)
chr6 (186-254)||(17398709-17398777)
[»] chr2 (1 HSPs)
chr2 (182-235)||(16378367-16378420)
[»] chr1 (3 HSPs)
chr1 (193-235)||(24178407-24178449)
chr1 (186-252)||(49384678-49384744)
chr1 (186-235)||(24178273-24178322)
[»] scaffold0252 (1 HSPs)
scaffold0252 (178-255)||(10489-10566)
[»] chr4 (1 HSPs)
chr4 (178-230)||(5817269-5817321)


Alignment Details
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 27762859 - 27762794
Alignment:
Q  187 aaaaatataaagtaattaatgatgatgtgacctatttaattaaaatatccaccaactcttttttgt 252  Q
    ||||||||| | |||||||||||| ||  ||| ||||||||||||||||||||| |||||||||||    
T  27762859 aaaaatatataataattaatgatggtgaaacccatttaattaaaatatccaccatctcttttttgt 27762794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 261
Target Start/End: Original strand, 31546703 - 31546779
Alignment:
Q  185 gaaaaaatataaagtaattaatgatgatgtgacctatttaattaaaatatccaccaactcttttttgtgttcatctc 261  Q
    |||||| | |||||||| |||||||| || |||| ||||||||||||||| ||| | ||||||||| |||| |||||    
T  31546703 gaaaaagtgtaaagtaactaatgatggtgggacccatttaattaaaatattcactacctcttttttatgtttatctc 31546779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 17398777 - 17398709
Alignment:
Q  186 aaaaaatataaagtaattaatgatgatgtgacctatttaattaaaatatccaccaactcttttttgtgt 254  Q
    |||||||| |||||||||||| ||| || || | ||||||||||||||||||| | |||||||||||||    
T  17398777 aaaaaatacaaagtaattaattatggtgggatccatttaattaaaatatccactatctcttttttgtgt 17398709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 16378367 - 16378420
Alignment:
Q  182 ttagaaaaaatataaagtaattaatgatgatgtgacctatttaattaaaatatc 235  Q
    |||||||||||||||||||||||||||||||   ||  ||||||||||||||||    
T  16378367 ttagaaaaaatataaagtaattaatgatgataaaacacatttaattaaaatatc 16378420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 235
Target Start/End: Original strand, 24178407 - 24178449
Alignment:
Q  193 ataaagtaattaatgatgatgtgacctatttaattaaaatatc 235  Q
    |||||||||||||||||| || |||| ||||||||||||||||    
T  24178407 ataaagtaattaatgatggtgggacccatttaattaaaatatc 24178449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 49384744 - 49384678
Alignment:
Q  186 aaaaaatataaagtaattaatgatgatgtgacctatttaattaaaatatccaccaactcttttttgt 252  Q
    ||||| |||||||||||||||||||  | |||  ||||||||||||||| ||| | |||||||||||    
T  49384744 aaaaagtataaagtaattaatgatggagggactcatttaattaaaatattcactatctcttttttgt 49384678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 235
Target Start/End: Original strand, 24178273 - 24178322
Alignment:
Q  186 aaaaaatataaagtaattaatgatgatgtgacctatttaattaaaatatc 235  Q
    ||||| ||||||| ||||||||||| || |||| ||||||||||||||||    
T  24178273 aaaaagtataaagcaattaatgatggtgggacccatttaattaaaatatc 24178322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0252 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 255
Target Start/End: Complemental strand, 10566 - 10489
Alignment:
Q  178 aatcttagaaaaaatataaagtaattaatgatgatgtgacctatttaattaaaatatccaccaactcttttttgtgtt 255  Q
    ||||||| ||||| |||||||| |||||||||| || || | ||||||||||||||| ||  | || |||||||||||    
T  10566 aatcttaaaaaaagtataaagttattaatgatggtgagatccatttaattaaaatattcattatctattttttgtgtt 10489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 5817269 - 5817321
Alignment:
Q  178 aatcttagaaaaaatataaagtaattaatgatgatgtgacctatttaattaaa 230  Q
    |||||| ||||||||| |||||||||||||||| ||  || ||||||||||||    
T  5817269 aatcttggaaaaaatacaaagtaattaatgatggtggaacttatttaattaaa 5817321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University