View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11624_low_23 (Length: 253)

Name: NF11624_low_23
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11624_low_23
NF11624_low_23
[»] chr1 (2 HSPs)
chr1 (1-253)||(29104337-29104577)
chr1 (1-253)||(29090076-29090316)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 29104577 - 29104337
Alignment:
Q  1 gactgggaagttcttgagatgaaaatcaacagttggttagaagcggttaagatctcagtgaggacgctcttcgccggagagaggaacctctgcgatcgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29104577 gactgggaagttcttgagatgaaaatcaacagttggttagaggcggttaagatctcagtgaggacgctcttcgccggagagaggaacctctgcgatcgaa 29104478  T
Q  101 tcttcgcttcgaattccatcaataattccatcaaagaagcttgttttgctgagatttctaagaatggagctattttgcttttcagatttcctgaagtcgt 200  Q
    ||||||||||||||||||            |||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||    
T  29104477 tcttcgcttcgaattcca------------tcaaagaagcttgttttgctgagatttctaaggatggagctattttacttttaagatttcctgaagtcgt 29104390  T
Q  201 tgcaaaaacaaagaaatcaaagccggagaagatttttcgattgcttgatatgt 253  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29104389 tgcaaaaacaaagaaatcaaagccggagaagatttttcgcttgcttgatatgt 29104337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 29090316 - 29090076
Alignment:
Q  1 gactgggaagttcttgagatgaaaatcaacagttggttagaagcggttaagatctcagtgaggacgctcttcgccggagagaggaacctctgcgatcgaa 100  Q
    |||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| || |||||  | |||||||| ||||||||||| ||||    
T  29090316 gactgggaagttcttgagatgaaaatcaactgttggttagaggcagttaagatctcagtgagaacactcttttctggagagagaaacctctgcgaacgaa 29090217  T
Q  101 tcttcgcttcgaattccatcaataattccatcaaagaagcttgttttgctgagatttctaaga-atggagctattttgcttttcagatttcctgaagtcg 199  Q
    | |||||||||||||||            |||| |||||||||||||| ||| ||||| |||| ||||||||| | | || ||  ||||||||||| |||    
T  29090216 ttttcgcttcgaattcc------------atcagagaagcttgttttggtgaaatttc-aagagatggagctactcttctcttacgatttcctgaattcg 29090130  T
Q  200 ttgcaaaaacaaagaaatcaaagccggagaagatttttcgattgcttgatatgt 253  Q
    |||| |||||||||||||  |  |||||||||||||| || |||||||||||||    
T  29090129 ttgcgaaaacaaagaaatggacaccggagaagattttccgtttgcttgatatgt 29090076  T

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