View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11624_low_26 (Length: 248)
Name: NF11624_low_26
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11624_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 4 - 233
Target Start/End: Complemental strand, 29104135 - 29103906
Alignment:
| Q |
4 |
aggaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccaga |
103 |
Q |
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| T |
29104135 |
aggaaacaatgcagtatctcattactcttgcagattacagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccaga |
29104036 |
T |
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| Q |
104 |
atcttacttatacagtccagaatcatcaaacaatactcctgaaatggagactggattttccgttcgaatagcgtggctgattctggttcttctttgtaaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29104035 |
atcttacttatacagtccagaatcatcaaacaatactcctgaaatggagactggattttccgttcgaatagcgtggctgattctggttcttctttgtaaa |
29103936 |
T |
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| Q |
204 |
attgatagcaaatcgaaacaatgcaagaat |
233 |
Q |
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| T |
29103935 |
attgatagcaaatcgaaacaatgcaagaat |
29103906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 34 - 232
Target Start/End: Complemental strand, 29089844 - 29089646
Alignment:
| Q |
34 |
cagattacagcaacgtgctctctgagatattctttgacattcctcctctgtcgaagtcaccgttgccagaatcttacttatacagtccagaatcatcaaa |
133 |
Q |
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| T |
29089844 |
cagattacagcaacgtgctttctgaaatattcttcgacattcctccgtcgttgaattccccattgccagaatcttacttatacagtccagaatcatccaa |
29089745 |
T |
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| Q |
134 |
caatactcctgaaatggagactggattttccgttcgaatagcgtggctgattctggttcttctttgtaaaattgatagcaaatcgaaacaatgcaagaa |
232 |
Q |
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| T |
29089744 |
ctactcgacggaaattgaaactgaattttccattcgaatagcgtggttgattctagttcttctctgcaaaatcgacgtcaaatcgaagcaatgcaagaa |
29089646 |
T |
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