View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11624_low_29 (Length: 238)

Name: NF11624_low_29
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11624_low_29
NF11624_low_29
[»] chr7 (2 HSPs)
chr7 (16-238)||(46404471-46404692)
chr7 (31-88)||(25268815-25268872)
[»] chr6 (2 HSPs)
chr6 (32-88)||(32136351-32136407)
chr6 (34-76)||(10334676-10334718)
[»] chr1 (4 HSPs)
chr1 (31-87)||(7347690-7347746)
chr1 (33-88)||(50322040-50322095)
chr1 (31-88)||(43391541-43391598)
chr1 (49-105)||(19392214-19392270)
[»] chr3 (1 HSPs)
chr3 (34-88)||(2990989-2991043)
[»] chr8 (2 HSPs)
chr8 (31-87)||(1310127-1310183)
chr8 (32-68)||(27330118-27330154)
[»] chr5 (1 HSPs)
chr5 (22-98)||(27725495-27725571)


Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 46404692 - 46404471
Alignment:
Q  16 aacactataacctatcagaatttgaacaaatatctattgtttcacgatacactatttagtataaaatattgtcgattagcggctgtagtgttgcggaact 115  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  46404692 aacactataacctatcagaatttgaacaaatatctattgttccacgatacactatttagtataaaatattgtcgattagcagctgtagtgttgcggaact 46404593  T
Q  116 tgaacaaatcattgttttccatgatccgcgaatgaggaatgacaactctatgttaaattgtttagtttagttattagaggtaaattgtctatgaagtttc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  46404592 tgaacaaatcattgttttccatgatccgcgaatgaggaatgacaactctatgttaaattgtttagtttagttattagaggtaaattgtctat-aagtttc 46404494  T
Q  216 aacttaatggtaaaagtttgaac 238  Q
    |||||||||||||||||||||||    
T  46404493 aacttaatggtaaaagtttgaac 46404471  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 25268815 - 25268872
Alignment:
Q  31 cagaatttgaacaaatatctattgtttcacgatacactatttagtataaaatattgtc 88  Q
    ||||||||||||||||   |||||||   | |||||||||||||||||||||||||||    
T  25268815 cagaatttgaacaaatcgttattgttctgctatacactatttagtataaaatattgtc 25268872  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 88
Target Start/End: Complemental strand, 32136407 - 32136351
Alignment:
Q  32 agaatttgaacaaatatctattgtttcacgatacactatttagtataaaatattgtc 88  Q
    ||||||| ||||||| ||  ||||| ||||||||||||||||||||||||| |||||    
T  32136407 agaatttaaacaaatctccgttgttccacgatacactatttagtataaaatgttgtc 32136351  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 10334718 - 10334676
Alignment:
Q  34 aatttgaacaaatatctattgtttcacgatacactatttagta 76  Q
    |||||||||||||| || ||||| |||||||||||||||||||    
T  10334718 aatttgaacaaatagctcttgttccacgatacactatttagta 10334676  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 7347690 - 7347746
Alignment:
Q  31 cagaatttgaacaaatatctattgtttcacgatacactatttagtataaaatattgt 87  Q
    ||||||||||||||||  |||||||||  | ||||||||||||||| ||||||||||    
T  7347690 cagaatttgaacaaattgctattgttttgcaatacactatttagtacaaaatattgt 7347746  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 50322040 - 50322095
Alignment:
Q  33 gaatttgaacaaatatctattgtttcacgatacactatttagtataaaatattgtc 88  Q
    |||||||||||||   ||||||||  ||||||||| ||||||||||||||||||||    
T  50322040 gaatttgaacaaaccactattgttctacgatacacaatttagtataaaatattgtc 50322095  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 88
Target Start/End: Complemental strand, 43391598 - 43391541
Alignment:
Q  31 cagaatttgaacaaatatctattgtttcacgatacactatttagtataaaatattgtc 88  Q
    ||||||||||||||||  |||||||| | |||| |||||||||||| ||||| |||||    
T  43391598 cagaatttgaacaaatcgctattgttccccgatgcactatttagtacaaaatgttgtc 43391541  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 105
Target Start/End: Original strand, 19392214 - 19392270
Alignment:
Q  49 ctattgtttcacgatacactatttagtataaaatattgtcgattagcggctgtagtg 105  Q
    |||||||||||||||| |||||| |||| ||||||||||| | |||| | |||||||    
T  19392214 ctattgtttcacgatatactattaagtacaaaatattgtcaaatagcagttgtagtg 19392270  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 2991043 - 2990989
Alignment:
Q  34 aatttgaacaaatatctattgtttcacgatacactatttagtataaaatattgtc 88  Q
    ||||||||||||| ||| ||||| |||||||| |||||||||| ||||| |||||    
T  2991043 aatttgaacaaatttcttttgttccacgatacgctatttagtacaaaatgttgtc 2990989  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 1310127 - 1310183
Alignment:
Q  31 cagaatttgaacaaatatctattgtttcacgatacactatttagtataaaatattgt 87  Q
    ||||||||||||||||  |||||||| |  |||||||||||||||| || |||||||    
T  1310127 cagaatttgaacaaattgctattgttccttgatacactatttagtacaatatattgt 1310183  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 27330154 - 27330118
Alignment:
Q  32 agaatttgaacaaatatctattgtttcacgatacact 68  Q
    |||||||||||||||  ||||||||||||||||||||    
T  27330154 agaatttgaacaaattgctattgtttcacgatacact 27330118  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 27725495 - 27725571
Alignment:
Q  22 ataacctatcagaatttgaacaaatatctattgtttcacgatacactatttagtataaaatattgtcgattagcggc 98  Q
    ||||| || ||||||||||||||||  | |||||| | | || |||||||||||| ||||||||||| | |||||||    
T  27725495 ataacgtagcagaatttgaacaaatcacaattgttccgcaatccactatttagtacaaaatattgtcaaatagcggc 27725571  T

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