View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11624_low_4 (Length: 475)
Name: NF11624_low_4
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11624_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 18 - 464
Target Start/End: Complemental strand, 26829040 - 26828594
Alignment:
| Q |
18 |
gaactaacatataggaggaatccctgtgacagcatgatcagccataaggaaatatcgtttgcaatttataagaatttttctcgcacaagttcttactatc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
26829040 |
gaactaacatataggaggaatccctgtgacagcatgatcagccataaggaaatatcgtttgcaatatataagaatttttctcgcacaagttcttactatc |
26828941 |
T |
|
| Q |
118 |
ctctggagtgtgactatacttggtttgaaacgctatctacattgcattgaagtaccataatcaaacacttgaactgagaaaatnnnnnnnntatatataa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26828940 |
ctctggagtgtgactatacttggtttgaaacgctatctacattgcattgaagtaccataatcaaacacttgaactgagaaaataaaaaaaaaatatataa |
26828841 |
T |
|
| Q |
218 |
actatgcatccaactttttgaaatggaagtttacgtcattgaacatagattgtgatttgtgaggaaccatctttcaatatcacagtatgtacaaacactt |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26828840 |
actatgcatccaactttttgaaatggaagtttacgtcattgaacatagattgtgatttgtgaggaactatctttcaatatcacagtatgtacaaacactt |
26828741 |
T |
|
| Q |
318 |
gtattcctaaaggcaatttaatcatatgtacatgagccatacagtgttattgcttctacacaagttgtgtctcagaaaatctgatccttatctgatttac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26828740 |
gtattcctaaaggcaatttaatcatatgtacatgagccatacagcgttattgcttctacacaagttgtgtctcagaaaatctgatccttatctgatttac |
26828641 |
T |
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| Q |
418 |
tctttccgtacggattggtgaaaacctcgtcctcctccatgcttcat |
464 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
26828640 |
tctttccgtatggattggtgaaaacctcgtcctcctccatgcttcat |
26828594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 215 - 353
Target Start/End: Complemental strand, 26641338 - 26641207
Alignment:
| Q |
215 |
taaactatgcatccaactttttgaaatggaagtttacgtcattgaacatagattgtgatttgtgaggaaccatctttcaatatcacagtatgtacaaaca |
314 |
Q |
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|||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| |||||||||||||||||| ||||| |
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| T |
26641338 |
taaactatgcatccaaatttttgaaatggaagttcacatcattgaactgagattgtgat-------gaaccatctgtcaatatcacagtatgtagaaaca |
26641246 |
T |
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| Q |
315 |
cttgtattcctaaaggcaatttaatcatatgtacatgag |
353 |
Q |
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|||||||||||||| ||||||||||||||| ||||||| |
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| T |
26641245 |
cttgtattcctaaaatcaatttaatcatatgaacatgag |
26641207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 215 - 353
Target Start/End: Complemental strand, 26747304 - 26747173
Alignment:
| Q |
215 |
taaactatgcatccaactttttgaaatggaagtttacgtcattgaacatagattgtgatttgtgaggaaccatctttcaatatcacagtatgtacaaaca |
314 |
Q |
| |
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|||||||||||||||| ||||||||||||||||| || ||||||||| |||||||||| ||||||||| |||||||||||||||||| ||||| |
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| T |
26747304 |
taaactatgcatccaaatttttgaaatggaagttcacatcattgaactgagattgtgat-------gaaccatctgtcaatatcacagtatgtagaaaca |
26747212 |
T |
|
| Q |
315 |
cttgtattcctaaaggcaatttaatcatatgtacatgag |
353 |
Q |
| |
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|||||||||||||| ||||||||||||||| ||||||| |
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| T |
26747211 |
cttgtattcctaaaatcaatttaatcatatgaacatgag |
26747173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 351 - 462
Target Start/End: Complemental strand, 26641006 - 26640893
Alignment:
| Q |
351 |
gagccatacagtgttattgcttctacacaagttgtgtctcagaaaatctg--atccttatctgatttactctttccgtacggattggtgaaaacctcgtc |
448 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| ||||||||||| |||| |||||||||||||||||||| || ||| |||||| |||||| | | || |
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| T |
26641006 |
gagccatacagtgttgttgcgtctacacaagttctgtctcagaaactctgatatccttatctgatttactctctctgtaaggattgatgaaaatcacatc |
26640907 |
T |
|
| Q |
449 |
ctcctccatgcttc |
462 |
Q |
| |
|
|||||||| |||| |
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| T |
26640906 |
atcctccattcttc |
26640893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 351 - 462
Target Start/End: Complemental strand, 26746972 - 26746859
Alignment:
| Q |
351 |
gagccatacagtgttattgcttctacacaagttgtgtctcagaaaatctg--atccttatctgatttactctttccgtacggattggtgaaaacctcgtc |
448 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| ||||||||||| |||| |||||||||||||||||||| || ||| |||||| |||||| | | || |
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| T |
26746972 |
gagccatacagtgttgttgcgtctacacaagttctgtctcagaaactctgatatccttatctgatttactctctctgtaaggattgatgaaaatcacatc |
26746873 |
T |
|
| Q |
449 |
ctcctccatgcttc |
462 |
Q |
| |
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|||||||| |||| |
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| T |
26746872 |
atcctccattcttc |
26746859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 26641451 - 26641396
Alignment:
| Q |
123 |
gagtgtgactatacttggtttgaaacgctatctacattgcattgaagtaccataat |
178 |
Q |
| |
|
||||||||||||||||| ||||||| || ||||||||| ||||||| ||||||||| |
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|
| T |
26641451 |
gagtgtgactatacttgttttgaaatgcaatctacattacattgaaataccataat |
26641396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 178
Target Start/End: Complemental strand, 26747417 - 26747362
Alignment:
| Q |
123 |
gagtgtgactatacttggtttgaaacgctatctacattgcattgaagtaccataat |
178 |
Q |
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||||||||||||||||| ||||||| || ||||||||| ||||||| ||||||||| |
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| T |
26747417 |
gagtgtgactatacttgttttgaaatgcaatctacattacattgaaataccataat |
26747362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 26641652 - 26641591
Alignment:
| Q |
59 |
ccataaggaaatatcgtttgcaatttataagaatttttctcgcacaagttcttactatcctc |
120 |
Q |
| |
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||||||||||||||| ||||||| |||||| |||| |||||||| ||||||||||||||| |
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| T |
26641652 |
ccataaggaaatatcttttgcaagacataagagttttcctcgcacatgttcttactatcctc |
26641591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 59 - 120
Target Start/End: Complemental strand, 26747618 - 26747557
Alignment:
| Q |
59 |
ccataaggaaatatcgtttgcaatttataagaatttttctcgcacaagttcttactatcctc |
120 |
Q |
| |
|
||||||||||||||| ||||||| |||||| |||| |||||||| ||||||||||||||| |
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|
| T |
26747618 |
ccataaggaaatatcttttgcaagacataagagttttcctcgcacatgttcttactatcctc |
26747557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 26890933 - 26890864
Alignment:
| Q |
274 |
ttgtgaggaaccatctttcaatatcacagtatgtacaaacacttgtattcctaaaggcaatttaatcata |
343 |
Q |
| |
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|||||| ||||||||| ||| ||||||| ||||||||||| |||||| || |||| |||| ||||||||| |
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| T |
26890933 |
ttgtgatgaaccatctgtcagtatcacaatatgtacaaactcttgtactcttaaaagcaaattaatcata |
26890864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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