View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11624_low_5 (Length: 437)
Name: NF11624_low_5
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11624_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 93 - 425
Target Start/End: Original strand, 15345134 - 15345466
Alignment:
| Q |
93 |
cagcatcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattgaaaaacacaggcacaaacgcaaatataa |
192 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15345134 |
cagcatcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattgaaaaacacaggcacaaacgcaaatataa |
15345233 |
T |
|
| Q |
193 |
accctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacggagaattggagaagaacagg |
292 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
15345234 |
accctaaaaaccttatgtatggaacatgaatcaggagttagcgctgaagaaggtaacagaacttacaagaattgaaaacggagaattggagaagaacata |
15345333 |
T |
|
| Q |
293 |
gagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcaccctactgaattgattgaa |
392 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
15345334 |
gagtttggaggccgtcgagagcgaacgtgacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctccccctactgaattgattgaa |
15345433 |
T |
|
| Q |
393 |
gaaggtaaagttattgaaggcaaaattcttctc |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
15345434 |
gaaggtaaagttattgaaggcaaaattcttctc |
15345466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 15345018 - 15345107
Alignment:
| Q |
17 |
atttgtgatatacaaataattaaaacatataaccttag------------tcaattgtgttctttcacaaatttgaaattgacaaaacca |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
15345018 |
atttgtgatatacaaataattaaaacatataaccttagcatttccttagctcaattgtgttctttcacaaatttgaaattgacaaaacca |
15345107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 93 - 425
Target Start/End: Original strand, 40504153 - 40504485
Alignment:
| Q |
93 |
cagcatcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattgaaaaacacaggcacaaacgcaaatataa |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
40504153 |
cagcatcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacttggaattgaaaaacacaggcacaaacgcaaatataa |
40504252 |
T |
|
| Q |
193 |
accctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacggagaattggagaagaacagg |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| | |
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|
| T |
40504253 |
accctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaacttacaagaatcgaaaatggagaattggagaagaacggt |
40504352 |
T |
|
| Q |
293 |
gagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcaccctactgaattgattgaa |
392 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40504353 |
gagtttgaaggctgtcgagagcgaacgagacgtgatacaaagagagatagagagtcgcgagcatcaataacccctttctcaccctactgaattgattgaa |
40504452 |
T |
|
| Q |
393 |
gaaggtaaagttattgaaggcaaaattcttctc |
425 |
Q |
| |
|
||||||||||| |||||| |||||||||||||| |
|
|
| T |
40504453 |
gaaggtaaagtgattgaatgcaaaattcttctc |
40504485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 40504087 - 40504126
Alignment:
| Q |
55 |
tcaattgtgttctttcacaaatttgaaattgacaaaacca |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40504087 |
tcaattgtgttctttcacaaatttgaaattgacaaaacca |
40504126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 40504028 - 40504065
Alignment:
| Q |
17 |
atttgtgatatacaaataattaaaacatataaccttag |
54 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40504028 |
atttgtgatatagaaataattaaaacatataaccttag |
40504065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 96 - 425
Target Start/End: Complemental strand, 24706335 - 24706006
Alignment:
| Q |
96 |
catcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattgaaaaacacaggcacaaacgcaaatataaacc |
195 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
24706335 |
catcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattgaaaaacacaagcacaaacgcaaatataaacc |
24706236 |
T |
|
| Q |
196 |
ctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacggagaattggagaagaacagggag |
295 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
24706235 |
ctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacaaaacttacaagaatcgaaaacagagaattggagaagaacagagag |
24706136 |
T |
|
| Q |
296 |
tttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcaccctactgaattgattgaagaa |
395 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
24706135 |
tttgaaggccgtcgagagcgaacgagacgtgagacaaagagagatagagagtcgcgagcatcaataacccctttttcaccctactgaattgattgaagaa |
24706036 |
T |
|
| Q |
396 |
ggtaaagttattgaaggcaaaattcttctc |
425 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| |
|
|
| T |
24706035 |
ggtaaagtgattgatggcaaaattcttctc |
24706006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 24706404 - 24706365
Alignment:
| Q |
55 |
tcaattgtgttctttcacaaatttgaaattgacaaaacca |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24706404 |
tcaattgtgttctttcacaaatttgaaattgacaaaacca |
24706365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 24706469 - 24706432
Alignment:
| Q |
17 |
atttgtgatatacaaataattaaaacatataaccttag |
54 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24706469 |
atttgtgatatacaaataattaaaacatataaccttag |
24706432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 93 - 425
Target Start/End: Complemental strand, 22108045 - 22107730
Alignment:
| Q |
93 |
cagcatcaaatattgaacaagctcaatttgaattgacattgaacattgaacacatgcaatcacatggaattgaaaaacacaggcacaaacgcaaatataa |
192 |
Q |
| |
|
|||||||||| ||||||||||| ||||| ||| ||||||||||||| ||||| ||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
22108045 |
cagcatcaaacattgaacaagcctaatttaaatcgacattgaacattaaacacg--------catggaattgaaaaacataggcacaaacacaaatataa |
22107954 |
T |
|
| Q |
193 |
accctaataaccttatgtatggaatatgaatcaggagttagcgctgaagaaggtgacagaactgacaagaatcgaaaacggagaattggagaagaacagg |
292 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
22107953 |
accctaataaccttttgtatggaatatgaatcaggagttagcgttgaagaaggtgacataacttacaagaatcgaaaacggagaattggagaagaacaaa |
22107854 |
T |
|
| Q |
293 |
gagtttggaggccgtcgagagcgaacgagacgtgatacaaagagagatagagaatcgcgagcatcaataacccctttctcaccctactgaattgattgaa |
392 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22107853 |
gagtttgaaggccgacgagagcgaacgagacgtgagacaaaaagagata---------gagcatcaataacccctttctcaccctactgaattgattgaa |
22107763 |
T |
|
| Q |
393 |
gaaggtaaagttattgaaggcaaaattcttctc |
425 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||| |
|
|
| T |
22107762 |
gaaggtaaagtgattgaaggcgaaattcttctc |
22107730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 22108111 - 22108072
Alignment:
| Q |
55 |
tcaattgtgttctttcacaaatttgaaattgacaaaacca |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22108111 |
tcaattgtgttctttcacaaatttgaaattgacaaaacca |
22108072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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