View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11624_low_8 (Length: 418)
Name: NF11624_low_8
Description: NF11624
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11624_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 394; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Complemental strand, 35448955 - 35448546
Alignment:
| Q |
1 |
tggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatgcatcagctatgccaatctataataatggtggatcatcatttcgtatggttgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
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| T |
35448955 |
tggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatgcatcagctatgccaatctatagtaatggtggatcatcatttcatatggttgag |
35448856 |
T |
|
| Q |
101 |
atgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatgggcagatggccatagtacaacctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35448855 |
atgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatgggcagatggccatagtacaacctg |
35448756 |
T |
|
| Q |
201 |
aatattcaagttttcctcacatgtctggtgctgatagaaatgccgtggagaccggctcaaatgtccgcgatgcttcagctatgccaatctctggtgtcga |
300 |
Q |
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| T |
35448755 |
aatattcaagttttcctcacatgtctggtgctgatagaaatgccgtggagaccggctcaaatgtccgcgatgcttcagctatgccaatctctggtatcga |
35448656 |
T |
|
| Q |
301 |
gtccaactcagattctgacaatgaagcagttatggattttctaaacatttgttctagctttccggatcttgtttctctgttttctggtatgtcctctctc |
400 |
Q |
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| T |
35448655 |
gtccaactcagattctgacaatgaagcagttatggattttctaaacacttgttctagctttccggatcttgtttctctgttttctggtatgtcctctctc |
35448556 |
T |
|
| Q |
401 |
ttgtgtttct |
410 |
Q |
| |
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|||||||||| |
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| T |
35448555 |
ttgtgtttct |
35448546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 35449186 - 35448891
Alignment:
| Q |
1 |
tggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatgcatcagctatgccaatctataataatggt---ggatcatcatttcgtatggtt |
97 |
Q |
| |
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|||| |||||||||||||| ||||| |||||||||||||| | ||| ||||||||| |||||||| |||||| ||| |||||| |||||||||||||| |
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| T |
35449186 |
tggtattgatgaaaatgtcctggaggcctgcccaattgtcggcaatacatcagctacgccaatctttaataacggtactggatcaccatttcgtatggtt |
35449087 |
T |
|
| Q |
98 |
gagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatgggcagatggccatagtacaac |
197 |
Q |
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|| ||||||||||| |||||| ||| |||||||||| ||||||||||||| ||||||| ||| || |||||| |||||||| |||||||||| | ||| |
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| T |
35449086 |
gatatgtctgctcatggagatttttcaagcatgcattatagtcagaactcgaacatgggttttcaacaaggaattaatggggggatggccataacagaac |
35448987 |
T |
|
| Q |
198 |
ctgaatattcaagttttcctca---catgtctggtgctgatagaaatgccgtggagaccggctcaaatgtccgcgatgcttcagctatgccaatct |
290 |
Q |
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| T |
35448986 |
ctgaatatccaagttcttctcctagcatgtttggtgttgatgaaaatgtcatggagacctgcccaattgtcaggaatgcatcagctatgccaatct |
35448891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 77 - 240
Target Start/End: Complemental strand, 35441087 - 35440921
Alignment:
| Q |
77 |
ggatcatcatttcgtatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaaggagttaatg |
176 |
Q |
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|||||||||||| |||||||||| | ||||||||| ||||||||| ||||||| | || ||||||||||||||||| | |||| ||||||||||||| |
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| T |
35441087 |
ggatcatcatttggtatggttgatacgtctgctcatggagatattccaagcatgacttttactcagaactcaaacatgggtatgcaacaaggagttaatg |
35440988 |
T |
|
| Q |
177 |
ggcagatggccatagtacaacctgaatattcaagttt---tcctcacatgtctggtgctgatagaaa |
240 |
Q |
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|| ||| ||||| ||||||| |||||||||| ||||||||||| |||||||||| |||| |
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| T |
35440987 |
ggggaatgaccatatccaaacctgataattcaagtttttctcctcacatgtttggtgctgatggaaa |
35440921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 35449347 - 35449239
Alignment:
| Q |
68 |
aataatggtggatcatcatttcgtatggttgagatgtctgctcacggagatattttaagcatgcatcatagtcagaactcaaacatggatttgcagcaag |
167 |
Q |
| |
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||||||||||||||||| ||| |||||||||| |||||||||| |||||| || || ||||||| ||||||||||| | ||||||| || || |||| |
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| T |
35449347 |
aataatggtggatcatcgtttggtatggttgacgtgtctgctcaaggagattgttcaaccatgcattatagtcagaacacgaacatgggctttcaacaag |
35449248 |
T |
|
| Q |
168 |
gagttaatg |
176 |
Q |
| |
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|| |||||| |
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| T |
35449247 |
gaattaatg |
35449239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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