View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_high_13 (Length: 482)
Name: NF11625_high_13
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 128 - 463
Target Start/End: Complemental strand, 39734377 - 39734042
Alignment:
| Q |
128 |
atccacatacggttgtgatgggaacagaaacacacattcaaactgaattaacggtgtctgatgaacgtttagtgggtagtgcagtcatgttcccttcaca |
227 |
Q |
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| T |
39734377 |
atccacatacggttgtgatgggaacagaaacacacattcaaagtaaattaacggtgtctgatgaacgtttagtgggtagtgcagtcatgttcccttcaca |
39734278 |
T |
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| Q |
228 |
cactaacaatattattaatcctttgagtgtgagtgcccatgatgtcatacatagtacacctcactttctccgaacttgtggcctctgtaattgtcgtttg |
327 |
Q |
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| T |
39734277 |
cactaacaatattattaatcctttgagtgcgagtgcccatgatgtcatacatagtacacctcactttctccgaacttgtggcctctgtaattgtcgtttg |
39734178 |
T |
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| Q |
328 |
gctcctggtcgagacatctacatgtataggtaggtatccatatttttctattattcattagtannnnnnnnnctgtgtgtcaaccctactctgcttaggg |
427 |
Q |
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| T |
39734177 |
gctcctggtcgagacatctacatgtataggtaggtatccatatttttctattattcattagta-ttttttttctgtgtgtaaaccctactctgcctaggg |
39734079 |
T |
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| Q |
428 |
-tagagtcttcgtaatctggagttcggtcgaaggtga |
463 |
Q |
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| T |
39734078 |
caagagtcttcgtaatccgaagttcagtcgaaggtga |
39734042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 39734534 - 39734405
Alignment:
| Q |
1 |
agcatgagtggtggtttatccgtggacatgcaagcacctgatcaaaccaacaacttagaatcccatcatgaagaacaatcagtgatgtctcatcagaatc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||| |
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| T |
39734534 |
agcatgagtggtggtttatccgtggacatgcaagcacatgatcaaaccaacaacttagaatcccatcatgaaaaagaatcagtgatgtctcatcataatc |
39734435 |
T |
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| Q |
101 |
ctctgcagccacatccacaccatgatgatc |
130 |
Q |
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| T |
39734434 |
ctctgcagccacatccacaccatgatgatc |
39734405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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