View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11625_high_15 (Length: 459)

Name: NF11625_high_15
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11625_high_15
NF11625_high_15
[»] chr4 (4 HSPs)
chr4 (139-455)||(25724888-25725204)
chr4 (21-52)||(25724773-25724804)
chr4 (106-144)||(18915076-18915114)
chr4 (106-144)||(46676528-46676566)
[»] chr8 (5 HSPs)
chr8 (304-454)||(9277190-9277340)
chr8 (310-454)||(31713396-31713539)
chr8 (310-348)||(31713878-31713916)
chr8 (302-348)||(40599879-40599925)
chr8 (106-134)||(444127-444155)
[»] chr2 (4 HSPs)
chr2 (310-454)||(4879056-4879199)
chr2 (106-144)||(12124538-12124576)
chr2 (106-144)||(31963096-31963134)
chr2 (106-144)||(40099413-40099451)
[»] chr3 (5 HSPs)
chr3 (310-346)||(50414475-50414511)
chr3 (310-348)||(53343866-53343904)
chr3 (106-143)||(2662086-2662123)
chr3 (110-143)||(9734785-9734818)
chr3 (106-134)||(47185834-47185862)
[»] chr1 (3 HSPs)
chr1 (310-389)||(27746127-27746206)
chr1 (106-144)||(2817403-2817441)
chr1 (108-144)||(13261164-13261200)
[»] scaffold0154 (1 HSPs)
scaffold0154 (106-144)||(10787-10825)
[»] chr7 (2 HSPs)
chr7 (106-136)||(28703509-28703539)
chr7 (108-136)||(3196674-3196702)
[»] chr5 (3 HSPs)
chr5 (106-136)||(28604448-28604478)
chr5 (106-144)||(34206220-34206258)
chr5 (306-354)||(2028333-2028381)


Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 139 - 455
Target Start/End: Original strand, 25724888 - 25725204
Alignment:
Q  139 gggacagtaaattactaaatttgataagaataacaatagttcgtcttaaacaattgggtggttttgctctaattttaaaaattaggtccttaagaaaaag 238  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25724888 gggacattaaattactaaatttgataagaataacaatagttcgtcttaaacaattgggtggttttgctctaattttaaaaattaggtccttaagaaaaag 25724987  T
Q  239 aagtacaagaaactaaaaaagagtcactcnnnnnnnnnnnnnnggtacataaaagagtcactctttatttaggtggattttagggtgagggttctaacaa 338  Q
    |||||||||||||||||||||||||||||              |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  25724988 aagtacaagaaactaaaaaagagtcactcttttttttttttttggtacataaaagagtcacactttatttaggtggattttaaggtgagggttctaacaa 25725087  T
Q  339 gtccctcaccaatggatcattgtgaaaaacattaatagccatttgattaatctaattgcttctatcctaccatacactttttacacaatatcacacttct 438  Q
     ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25725088 atccctcaccgatggatcattgtgaaaaacattaatagccatttgattaatctaattgcttgtatcctaccatacactttttacacaatatcacacttct 25725187  T
Q  439 ttgttttcttctctctc 455  Q
    |||||||||||||||||    
T  25725188 ttgttttcttctctctc 25725204  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 52
Target Start/End: Original strand, 25724773 - 25724804
Alignment:
Q  21 tagatttattagatgattgagtgaatattgag 52  Q
    ||||||||||||||||||||||||||||||||    
T  25724773 tagatttattagatgattgagtgaatattgag 25724804  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 18915076 - 18915114
Alignment:
Q  106 tgcattgtctttaccaactgagctaaactcatggggaca 144  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  18915076 tgcattgtccttaccaactgagctaaactcacggggaca 18915114  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 46676528 - 46676566
Alignment:
Q  106 tgcattgtctttaccaactgagctaaactcatggggaca 144  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  46676528 tgcattgtccttaccaactgagctaagctcatggggaca 46676566  T

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Target: chr8 (Bit Score: 115; Significance: 3e-58; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 304 - 454
Target Start/End: Original strand, 9277190 - 9277340
Alignment:
Q  304 tatttaggtggattttagggtgagggttctaacaagtccctcaccaatggatcattgtgaaaaacattaatagccatttgattaatctaattgcttctat 403  Q
    ||||| |||||||| |||||||||||||||||||||||||||| |  |||| |||||||||||||||||||||||||||||||||||||||||||| |||    
T  9277190 tatttgggtggattctagggtgagggttctaacaagtccctcatcggtggaccattgtgaaaaacattaatagccatttgattaatctaattgcttgtat 9277289  T
Q  404 cctaccatacactttttacacaatatcacacttctttgttttcttctctct 454  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  9277290 cctaccatacactctttacacaatatcacgcttctttgttttcttctctct 9277340  T

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Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 310 - 454
Target Start/End: Original strand, 31713396 - 31713539
Alignment:
Q  310 ggtggattttagggtgagggttctaacaagtccctcaccaatggatcattgtgaaaaacattaatagccatttgattaatctaattgcttctatcctacc 409  Q
    |||||||| |||||||| ||||||||||||||||||| |  |||| |||| | ||||||||||||| ||||| ||||||||||| ||||| |||||||||    
T  31713396 ggtggattctagggtgaaggttctaacaagtccctcatcggtggaccattataaaaaacattaatatccattcgattaatctaagtgcttgtatcctacc 31713495  T
Q  410 atacactttttacacaatatcacacttctttgttttcttctctct 454  Q
     |||||||| | ||||||||||||||||||| |||||||||||||    
T  31713496 -tacactttatgcacaatatcacacttctttcttttcttctctct 31713539  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 348
Target Start/End: Complemental strand, 31713916 - 31713878
Alignment:
Q  310 ggtggattttagggtgagggttctaacaagtccctcacc 348  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  31713916 ggtggattctagggtgagggttctaacaagtccctcacc 31713878  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 302 - 348
Target Start/End: Original strand, 40599879 - 40599925
Alignment:
Q  302 tttatttaggtggattttagggtgagggttctaacaagtccctcacc 348  Q
    ||||||| |||||||| |||| ||||||||| |||||||||||||||    
T  40599879 tttattttggtggattctaggatgagggttcaaacaagtccctcacc 40599925  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 134
Target Start/End: Complemental strand, 444155 - 444127
Alignment:
Q  106 tgcattgtctttaccaactgagctaaact 134  Q
    |||||||||||||||||||||||||||||    
T  444155 tgcattgtctttaccaactgagctaaact 444127  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 310 - 454
Target Start/End: Original strand, 4879056 - 4879199
Alignment:
Q  310 ggtggattttagggtgagggttctaacaagtccctcaccaatggatcattgtgaaaaacattaatagccatttgattaatctaattgcttctatcctacc 409  Q
    |||||||| |||||||| ||||||||||||||||||| |  |||| |||| | ||||||||||||| ||||| ||||||||||| ||||| |||||||||    
T  4879056 ggtggattctagggtgaaggttctaacaagtccctcatcggtggaccattataaaaaacattaatatccattcgattaatctaagtgcttgtatcctacc 4879155  T
Q  410 atacactttttacacaatatcacacttctttgttttcttctctct 454  Q
     |||||||| | ||||||||||||||||||| |||||||||||||    
T  4879156 -tacactttatgcacaatatcacacttctttcttttcttctctct 4879199  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 12124576 - 12124538
Alignment:
Q  106 tgcattgtctttaccaactgagctaaactcatggggaca 144  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  12124576 tgcattgtccttaccaactgagctaaactcacggggaca 12124538  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 31963096 - 31963134
Alignment:
Q  106 tgcattgtctttaccaactgagctaaactcatggggaca 144  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  31963096 tgcattgtccttaccaactgagctatactcatggggaca 31963134  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 40099413 - 40099451
Alignment:
Q  106 tgcattgtctttaccaactgagctaaactcatggggaca 144  Q
    ||||||||| |||||||||||||||| ||||||||||||    
T  40099413 tgcattgtccttaccaactgagctaagctcatggggaca 40099451  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 346
Target Start/End: Complemental strand, 50414511 - 50414475
Alignment:
Q  310 ggtggattttagggtgagggttctaacaagtccctca 346  Q
    |||||||||||||||||||||| ||||||||||||||    
T  50414511 ggtggattttagggtgagggttttaacaagtccctca 50414475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 348
Target Start/End: Complemental strand, 53343904 - 53343866
Alignment:
Q  310 ggtggattttagggtgagggttctaacaagtccctcacc 348  Q
    |||||||| |||||||||||||| |||||||||||||||    
T  53343904 ggtggattctagggtgagggttcaaacaagtccctcacc 53343866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 143
Target Start/End: Complemental strand, 2662123 - 2662086
Alignment:
Q  106 tgcattgtctttaccaactgagctaaactcatggggac 143  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  2662123 tgcattgtctttaccaactgagctaaacttatgaggac 2662086  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 143
Target Start/End: Original strand, 9734785 - 9734818
Alignment:
Q  110 ttgtctttaccaactgagctaaactcatggggac 143  Q
    |||||||||||||||||||||| |||||||||||    
T  9734785 ttgtctttaccaactgagctaagctcatggggac 9734818  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 47185834 - 47185862
Alignment:
Q  106 tgcattgtctttaccaactgagctaaact 134  Q
    |||||||||||||||||||||||||||||    
T  47185834 tgcattgtctttaccaactgagctaaact 47185862  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 389
Target Start/End: Complemental strand, 27746206 - 27746127
Alignment:
Q  310 ggtggattttagggtgagggttctaacaagtccctcaccaatggatcattgtgaaaaacattaatagccatttgattaat 389  Q
    |||||||| ||| |||||||||| |  ||||||||||||| |||||||  ||||| |||| ||| ||||||| |||||||    
T  27746206 ggtggattctagcgtgagggttcaattaagtccctcaccagtggatcaccgtgaataacaataagagccattagattaat 27746127  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 2817403 - 2817441
Alignment:
Q  106 tgcattgtctttaccaactgagctaaactcatggggaca 144  Q
    ||||||||| ||||||||||||||||| |||||||||||    
T  2817403 tgcattgtccttaccaactgagctaaattcatggggaca 2817441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 144
Target Start/End: Complemental strand, 13261200 - 13261164
Alignment:
Q  108 cattgtctttaccaactgagctaaactcatggggaca 144  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  13261200 cattgtctttaccaactgagttaaactcatcgggaca 13261164  T

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Target: scaffold0154 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 144
Target Start/End: Original strand, 10787 - 10825
Alignment:
Q  106 tgcattgtctttaccaactgagctaaactcatggggaca 144  Q
    ||||||||| ||||||||||||||||||||| |||||||    
T  10787 tgcattgtccttaccaactgagctaaactcacggggaca 10825  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 136
Target Start/End: Complemental strand, 28703539 - 28703509
Alignment:
Q  106 tgcattgtctttaccaactgagctaaactca 136  Q
    |||||||||||||||||||||||||||||||    
T  28703539 tgcattgtctttaccaactgagctaaactca 28703509  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 108 - 136
Target Start/End: Original strand, 3196674 - 3196702
Alignment:
Q  108 cattgtctttaccaactgagctaaactca 136  Q
    |||||||||||||||||||||||||||||    
T  3196674 cattgtctttaccaactgagctaaactca 3196702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 136
Target Start/End: Original strand, 28604448 - 28604478
Alignment:
Q  106 tgcattgtctttaccaactgagctaaactca 136  Q
    |||||||||||||||||||||||||||||||    
T  28604448 tgcattgtctttaccaactgagctaaactca 28604478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 34206258 - 34206220
Alignment:
Q  106 tgcattgtctttaccaactgagctaaactcatggggaca 144  Q
    |||||||||||||||||||||| |||||||| |||||||    
T  34206258 tgcattgtctttaccaactgagttaaactcacggggaca 34206220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 2028333 - 2028381
Alignment:
Q  306 tttaggtggattttagggtgagggttctaacaagtccctcaccaatgga 354  Q
    ||||||||||||||||||||||||||| |  ||||||||| || |||||    
T  2028333 tttaggtggattttagggtgagggttcaactaagtccctcgccgatgga 2028381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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