View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_high_16 (Length: 456)
Name: NF11625_high_16
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 20 - 446
Target Start/End: Original strand, 1707019 - 1707445
Alignment:
| Q |
20 |
ttaccatcttttgatttgtaaatggaaaaagatttgcatgttattgttttggccaaatgaaaatcaatagaagatgttaagaatggcattggtgggtggg |
119 |
Q |
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| T |
1707019 |
ttaccatcttttgatttgtaaatggtaaaagatttgcatgtaattgttttggccaaatgaaaatcaatagaaaatgttaagaatggcattggtgggtggg |
1707118 |
T |
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| Q |
120 |
atagtaaggaaaaattgattttgatattgatgggatgctttatagttataatgtaaaaggtaatgtccagcggagtagcttaacatgcgcttatcattaa |
219 |
Q |
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| T |
1707119 |
atagtaagggaaaattgattttgatattgatgggatgctttatagttatagtgtaaaaggtaatgtccagcggagtagcttaacatgcgcttatcattaa |
1707218 |
T |
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| Q |
220 |
actttggtatagattttcattttgtgatgcctgttactcaaccaattaagttagaagccatgtctatagtttgactagtcattcacatatctttgtgata |
319 |
Q |
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| T |
1707219 |
actttggtatagattttcattttgtgatgcctgttactcaaccaattaagttagaagccatgtctatagtttgactagtcattcacatatctttgtgata |
1707318 |
T |
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| Q |
320 |
cttgcattgtttgttgggaagatagtttgagcttctcggctttgatattgaaatgatttgttttcggtctctccatttgattatattctctttgaactgt |
419 |
Q |
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| T |
1707319 |
cttgcattgtttgttgggaagatagtttgagcttctcggctttgatattgaaatgatttgttttcggtctctccatttgattatattctctttgaactgt |
1707418 |
T |
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| Q |
420 |
agtttcaccatttaatccgagtctctg |
446 |
Q |
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| T |
1707419 |
agtttcaccatttaatccgagtctctg |
1707445 |
T |
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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 337
Target Start/End: Original strand, 29163584 - 29163674
Alignment:
| Q |
247 |
tgcctgttactcaaccaattaagttagaagccatgtctatagtttgactagtcattcacata-tctttgtgatacttgcattgtttgttggg |
337 |
Q |
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| T |
29163584 |
tgcctgttactcagcctgttaagttagaagccatgtctttag-ttgactagtcattcacatattctctgtgatacttacattgtttgctggg |
29163674 |
T |
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