View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_high_20 (Length: 407)
Name: NF11625_high_20
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 30362460 - 30362084
Alignment:
| Q |
15 |
acctgtggacctatgggtatcccgttacgctcagcttccattacaaaaaataagagagatcgtcgtcaaattcaacatagatttaaattattagttaaaa |
114 |
Q |
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| T |
30362460 |
acctgtggacctatgggtatcccgttacgttcagcttccattacaaaaaataagagagatcgtcgtcaaattcaacaaagatttaaattattagttaaaa |
30362361 |
T |
|
| Q |
115 |
ttcattatgatataagtgatgaataaaggtgtgtttacttgtaagattggcaagggaatctgtgagatagcaaggtatagtagtgtttaaattaggtgca |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30362360 |
ttcattatgatataagtgatgaataaaggtgtgtttacttgtaagattggcaagggaatctgtgagatagcaaggtatagtagtgtttaaattaggtgca |
30362261 |
T |
|
| Q |
215 |
ttggctgcatatcgagatgtgtagtggtttaatccaataaaatcaaaagaaccgttgagtagcctggtttgttcttcagagaactttggcaatcgttgtc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30362260 |
ttggctgcatatcgagatgtgtagtggtttaatccaataaaatcaaaagaaccgttgagtagcctggtttgttcttcagagaactttggcaatcgttgtc |
30362161 |
T |
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| Q |
315 |
caaccaaggatcgcatatgttgtggatagtctcctgttgtcaatggtgtcataaacctgaaatagagatttcaatag |
391 |
Q |
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| T |
30362160 |
caaccaaggatcgcatatgttgtggatagtctcctgttgtcaatggtgtcataaacctgaaatagagatttcaatag |
30362084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 29400651 - 29400868
Alignment:
| Q |
15 |
acctgtggacctatgggtatcccgttacgctcagcttccattacaaaaaataagagagatcgtcgtcaaattcaacatagatttaaattattagttaaaa |
114 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||| || ||||||||||||||||| |||||||||||||||||||| |
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| T |
29400651 |
acctgtggacctatggatatcccgttacgctcagcttccatcacaaaaaatgagagatgtcatcgtcaaattcaacatatatttaaattattagttaaaa |
29400750 |
T |
|
| Q |
115 |
ttcattatgatataagtgatgaataaaggtgtgtttacttgtaagattggcaagggaatctgtgagatagcaaggtatagtagtgtttaaattaggtgca |
214 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
29400751 |
ttaattatgatttaagtgatgaataaaggtgtgtttacttgtaagattggcaagggaatctgtgagatagcaaggtatagtagtgtttaaattaggttca |
29400850 |
T |
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| Q |
215 |
ttggctgcatatcgagat |
232 |
Q |
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||||||||||||| |||| |
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| T |
29400851 |
ttggctgcatatctagat |
29400868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 352 - 389
Target Start/End: Original strand, 29400894 - 29400931
Alignment:
| Q |
352 |
tgtcaatggtgtcataaacctgaaatagagatttcaat |
389 |
Q |
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|||||||||||||||||||||| ||| ||||||||||| |
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| T |
29400894 |
tgtcaatggtgtcataaacctgcaattgagatttcaat |
29400931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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