View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_high_21 (Length: 403)
Name: NF11625_high_21
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_high_21 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 26 - 386
Target Start/End: Complemental strand, 44565978 - 44565618
Alignment:
| Q |
26 |
tcaaccccaaaaatacttaaaggcactatgtaaaactatttttccatgttgtatttactaacattattcttcttttcagcataatctgctatgattctac |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44565978 |
tcaaccccaaaaatacttaaaggcactatgtaaaactatttttccatgttgtatttactaacattattcttcttttcagcattatctgctatgattctac |
44565879 |
T |
|
| Q |
126 |
ttgaatttttcaaccattagcagttacctacattatgtattgcctcaatccacaggaataaatgtttttgattaaacaatgaagcctgcgttaaaggcaa |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44565878 |
ttgaatttttcaaccattagcagttacctacattatgtattgcctcaatccacaggaataaatgtttttgatgaaacaatgaagcctgcgttaaaggcaa |
44565779 |
T |
|
| Q |
226 |
ctaaaaagccaggnnnnnnnnnntccccaaaaccataccttactaacagagacataagaccagtataaccaaggagagtttgaaaagctgatccaataat |
325 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44565778 |
ctaaaaagccaggaaaaaaaaaatccccaaaaccataccttactaacagagacataagaccagtataaccaaggagagtttgaaaagctgatccaataat |
44565679 |
T |
|
| Q |
326 |
tatagccccttgcagctccttcattatatgtttgaatttctgaaaattgatatagaaacat |
386 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44565678 |
tatagccccttgcagctccttcattatatgtttgaatttctgaaaattgatatagaaacat |
44565618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 48 - 378
Target Start/End: Original strand, 36034849 - 36035164
Alignment:
| Q |
48 |
gcactatgtaaaactatttttccatgttgtatttactaacattattcttcttttcagcataatctgctatgattctacttgaatttttcaaccattagca |
147 |
Q |
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|||||||| || |||||||| || |||||| ||||||||| | ||||| |||||| ||||||||| || ||||||||| | ||||||| ||| | |
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| T |
36034849 |
gcactatgcaatactattttcccctgttgtttttactaacgcaggttttcttcccagcattatctgctatagttttacttgaatctctcaaccactagga |
36034948 |
T |
|
| Q |
148 |
gttacctacattatgtattgcctcaatccacaggaataaatgtttttgattaaacaatgaagcctgcgttaaaggcaactaaaaagccaggnnnnnnnnn |
247 |
Q |
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|||||||||||||||||||||||||||||||| || ||| ||||||||| || |||||||||| |||||||||||| |
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| T |
36034949 |
gttacctacattatgtattgcctcaatccacaagagcaaa--------------caatgaagcatgt-ttaaaggcaaataaaaagccaggaaaaacaaa |
36035033 |
T |
|
| Q |
248 |
ntccccaaaaccataccttactaacagagacataagaccagtataaccaaggagagtttgaaaagctgatccaataattatagccccttgcagctccttc |
347 |
Q |
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||| ||| |||||||||||||||| |||||||| |||||||| ||||||| |||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
36035034 |
acccctaaactcataccttactaacagtgacataagtccagtatatccaaggaaagtttgaaaagcagatccaataattatagccccctgcagctccttc |
36035133 |
T |
|
| Q |
348 |
attatatgtttgaatttctgaaaattgatat |
378 |
Q |
| |
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||||||||| |||||||||||||||||||| |
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| T |
36035134 |
attatatgtcggaatttctgaaaattgatat |
36035164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 44566100 - 44566128
Alignment:
| Q |
1 |
tttgacatctcaattttcaggtttatcaa |
29 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
44566100 |
tttgacatctcaattttcaggtttatcaa |
44566128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 254 - 375
Target Start/End: Complemental strand, 20120849 - 20120728
Alignment:
| Q |
254 |
aaaaccataccttactaacagagacataagaccagtataaccaaggagagtttgaaaagctgatccaataattatagccccttgcagctccttcattata |
353 |
Q |
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|||| ||||||||||||| || |||||||| || ||||| ||||| |||| |||||| || || ||||||||||||||||| || |||||| |||||||| |
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| T |
20120849 |
aaaatcataccttactaagagtgacataagtccggtatatccaagtagagcttgaaaggcggacccaataattatagccccctgaagctccctcattata |
20120750 |
T |
|
| Q |
354 |
tgtttgaatttctgaaaattga |
375 |
Q |
| |
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|| ||||||||||| ||||||| |
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| T |
20120749 |
tgcttgaatttctgcaaattga |
20120728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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