View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11625_high_22 (Length: 391)

Name: NF11625_high_22
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11625_high_22
NF11625_high_22
[»] chr2 (6 HSPs)
chr2 (10-376)||(36121923-36122274)
chr2 (183-243)||(43531927-43531987)
chr2 (189-241)||(43513914-43513966)
chr2 (185-229)||(43971881-43971925)
chr2 (185-243)||(32622219-32622277)
chr2 (187-243)||(26845535-26845591)
[»] chr4 (8 HSPs)
chr4 (187-343)||(38916702-38916860)
chr4 (185-271)||(17524205-17524291)
chr4 (187-243)||(4592709-4592765)
chr4 (185-229)||(31141680-31141724)
chr4 (185-243)||(11306607-11306665)
chr4 (185-243)||(45505413-45505471)
chr4 (185-271)||(49984124-49984210)
chr4 (185-229)||(17524571-17524615)
[»] chr8 (5 HSPs)
chr8 (181-270)||(3016008-3016097)
chr8 (188-271)||(18935374-18935457)
chr8 (183-243)||(16049831-16049891)
chr8 (187-229)||(3111463-3111505)
chr8 (185-229)||(4623468-4623512)
[»] chr1 (10 HSPs)
chr1 (185-243)||(25622609-25622667)
chr1 (185-229)||(48171804-48171848)
chr1 (183-267)||(33460215-33460299)
chr1 (184-263)||(18519623-18519702)
chr1 (185-243)||(33459896-33459954)
chr1 (185-243)||(48171443-48171501)
chr1 (185-229)||(6043449-6043493)
chr1 (187-235)||(40744172-40744220)
chr1 (185-229)||(42604631-42604675)
chr1 (185-229)||(42604997-42605041)
[»] scaffold0015 (1 HSPs)
scaffold0015 (185-243)||(47429-47487)
[»] chr7 (4 HSPs)
chr7 (185-243)||(24188223-24188281)
chr7 (184-243)||(7460895-7460954)
chr7 (185-243)||(17813977-17814035)
chr7 (176-229)||(34536051-34536104)
[»] chr3 (2 HSPs)
chr3 (185-267)||(48618811-48618893)
chr3 (185-229)||(33241847-33241891)
[»] chr6 (5 HSPs)
chr6 (185-229)||(22793635-22793679)
chr6 (184-271)||(6209833-6209920)
chr6 (185-271)||(22793302-22793388)
chr6 (183-229)||(28645267-28645313)
chr6 (185-243)||(34829909-34829967)
[»] scaffold0548 (1 HSPs)
scaffold0548 (185-243)||(3385-3443)
[»] scaffold0400 (1 HSPs)
scaffold0400 (185-243)||(9926-9984)
[»] scaffold0365 (1 HSPs)
scaffold0365 (185-243)||(10569-10627)
[»] chr5 (2 HSPs)
chr5 (183-229)||(25508172-25508218)
chr5 (185-243)||(33992336-33992394)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 10 - 376
Target Start/End: Complemental strand, 36122274 - 36121923
Alignment:
Q  10 atctacaaccatgtaatactcactagtcacttcaaaggtagtggaagcaaatattcagtgaatac------gtctgaatcaaacttaaagtcttaaaaca 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||            
T  36122274 atctacaaccatgtaatactcactagtcacttcaaaggtagtggaagcaaatattcagtgaatactaaatagtctgaatcaaacttaaagtc-------- 36122183  T
Q  104 agggaggattttagttttaacagattgaagatcaaagacacatcacatgaggttttaaaaacattttcaaagaaataatgtttaattgcatgtttggtcc 203  Q
           |  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  36122182 -------acctatgttttaacagattgaagatcaaagacacatcacatgaggttttaaaaacattttcaaagaaacaatgtttaattgcatgtttggtcc 36122090  T
Q  204 cttacgtttatattaggtttcaagttagtctcctatgtttctaacctttcaagttgatctcttatgttacttggtcaacataagttcagcctttatgtca 303  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36122089 cttacgtttatattaggtttcaagttagtctcctatgtttctaaccattcaagttgatctcttatgttacttggtcaacataagttcagcctttatgtca 36121990  T
Q  304 aactttcgttaactctacctaaaacatccacgtgtcacccccacaccccacgttatccatgtgtgcatctctg 376  Q
    |||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||    
T  36121989 aactttcgttaactctacctaaaacatccacgtgt------cacaccccacgttatccatgtgtgcatctctg 36121923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 43531927 - 43531987
Alignment:
Q  183 gtttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    ||||||||||||| | |||||||||||||||| |||||||||||||| |||||||||||||    
T  43531927 gtttaattgcatgatcggtcccttacgtttattttaggtttcaagttggtctcctatgttt 43531987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 43513966 - 43513914
Alignment:
Q  189 ttgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgt 241  Q
    ||||||||||| ||||||| ||||||||||||||||||||| ||||| |||||    
T  43513966 ttgcatgtttgatcccttatgtttatattaggtttcaagttggtctcttatgt 43513914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 43971925 - 43971881
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagtt 229  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||    
T  43971925 ttaattgcatgtttggtcccttatgtttattttaggtttcaagtt 43971881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 32622219 - 32622277
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    ||||||||||||||| ||||||| |||||| |||| ||||||||| ||||| |||||||    
T  32622219 ttaattgcatgtttgatcccttatgtttattttagttttcaagttggtctcttatgttt 32622277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 26845591 - 26845535
Alignment:
Q  187 aattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    ||||||||||||||||||||| |||||| |||||||| ||||| ||| | |||||||    
T  26845591 aattgcatgtttggtcccttatgtttattttaggttttaagttggtcccttatgttt 26845535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 187 - 343
Target Start/End: Original strand, 38916702 - 38916860
Alignment:
Q  187 aattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgtttctaacctttcaagttgatctcttatgttact-tggtcaacata 285  Q
    ||||||||||| ||| ||||| |||||| |||||||||| ||| ||| |||| ||||  ||  |||||||||||||||||| || |||   |||||||||    
T  38916702 aattgcatgttcggttccttaagtttattttaggtttcatgttggtcccctacgtttagaaagtttcaagttgatctcttacgtcactgatgtcaacata 38916801  T
Q  286 agttcagcctttatgtcaaacttt-cgttaactctacctaaaacatccacgtgtcaccc 343  Q
    |||||| |||||  |||||| |||  ||||||||| |||||||||| |||||| |||||    
T  38916802 agttcatcctttccgtcaaattttgagttaactctgcctaaaacattcacgtggcaccc 38916860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 271
Target Start/End: Original strand, 17524205 - 17524291
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgtttctaacctttcaagttgatctcttatgtt 271  Q
    ||||||||||||||| ||||||| |||||| |||| ||||||||| ||| | |||||||  ||  ||||||||||||||||||||||    
T  17524205 ttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttgatctcttatgtt 17524291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 4592765 - 4592709
Alignment:
Q  187 aattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    ||||||||||||||||||||| |||||| |||||||| ||||| ||||| |||||||    
T  4592765 aattgcatgtttggtcccttatgtttattttaggttttaagttggtctcttatgttt 4592709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 31141680 - 31141724
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagtt 229  Q
    |||||||||||||||||||| || |||||| ||||||||||||||    
T  31141680 ttaattgcatgtttggtcccgtatgtttatcttaggtttcaagtt 31141724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 11306665 - 11306607
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    ||||||||||||||| ||||||| |||||| |||| ||||||||| ||| | |||||||    
T  11306665 ttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttt 11306607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 45505471 - 45505413
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    ||||||||||||||| ||||||| |||||| |||| ||||||||| ||| | |||||||    
T  45505471 ttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttt 45505413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 271
Target Start/End: Complemental strand, 49984210 - 49984124
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgtttctaacctttcaagttgatctcttatgtt 271  Q
    ||||||||||||||| ||||||| |||||| |||||||||| ||| ||  | |||||||  ||  |||||||||| || ||||||||    
T  49984210 ttaattgcatgtttgatcccttatgtttattttaggtttcatgttggttccttatgttttaaaagtttcaagttggtcccttatgtt 49984124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 17524615 - 17524571
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagtt 229  Q
    ||||||||||||||| || ||||||||||| |||| |||||||||    
T  17524615 ttaattgcatgtttgatctcttacgtttattttagttttcaagtt 17524571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 181 - 270
Target Start/End: Complemental strand, 3016097 - 3016008
Alignment:
Q  181 atgtttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgtttctaacctttcaagttgatctcttatgt 270  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||| ||| || || |||  ||  ||||||||||||| |||||||    
T  3016097 atgtttaattgcatgtttggtcccttaagtttattttaggtttcaagttggtcccccatctttaaaaagtttcaagttgatcccttatgt 3016008  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 18935457 - 18935374
Alignment:
Q  188 attgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgtttctaacctttcaagttgatctcttatgtt 271  Q
    |||||||||||||||||||| |||||| |||||||||| ||| ||| | |||||||  ||  |||||||||| |||||| ||||    
T  18935457 attgcatgtttggtcccttatgtttattttaggtttcatgttggtcccttatgttttaaaagtttcaagttggtctcttgtgtt 18935374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 243
Target Start/End: Complemental strand, 16049891 - 16049831
Alignment:
Q  183 gtttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    ||||||||||||||||| ||||||| |||||| |||| ||||||||| ||| | |||||||    
T  16049891 gtttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttt 16049831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 3111463 - 3111505
Alignment:
Q  187 aattgcatgtttggtcccttacgtttatattaggtttcaagtt 229  Q
    ||||||||| |||||||| ||||||||| ||||||||||||||    
T  3111463 aattgcatgattggtcccctacgtttattttaggtttcaagtt 3111505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 4623512 - 4623468
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagtt 229  Q
    ||||||||||||||| ||||||| |||||| |||| |||||||||    
T  4623512 ttaattgcatgtttgatcccttatgtttattttagttttcaagtt 4623468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 25622609 - 25622667
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    |||||||||||||| |||||||| |||||| ||||||||||| |||||||| |||||||    
T  25622609 ttaattgcatgtttagtcccttatgtttattttaggtttcaaattagtctcttatgttt 25622667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 48171848 - 48171804
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagtt 229  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||    
T  48171848 ttaattgcatgtttggtcccttatgtttattttaggtttcaagtt 48171804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 33460299 - 33460215
Alignment:
Q  183 gtttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgtttctaacctttcaagttgatctctta 267  Q
    ||||||||||||||||| || |||| |||||| |||| ||||||||| ||| | |||||||  ||  ||||||||||||| ||||    
T  33460299 gtttaattgcatgtttgatctcttatgtttattttagttttcaagttggtcccttatgttttaaaagtttcaagttgatccctta 33460215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 263
Target Start/End: Complemental strand, 18519702 - 18519623
Alignment:
Q  184 tttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgtttctaacctttcaagttgatct 263  Q
    |||||||||||||||| || |||| |||||| |||| ||||||||| ||||| || ||||  ||  ||||||||||||||    
T  18519702 tttaattgcatgtttgatctcttatgtttattttagttttcaagttggtctcatacgttttaaaagtttcaagttgatct 18519623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 33459896 - 33459954
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    ||||||||||| ||| ||||||| |||||| |||| ||||||||||||| | |||||||    
T  33459896 ttaattgcatgcttgatcccttatgtttattttagttttcaagttagtcccttatgttt 33459954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 48171443 - 48171501
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    ||||||||||||||| ||||||| |||||| |||||||||| ||| ||| | |||||||    
T  48171443 ttaattgcatgtttgatcccttatgtttattttaggtttcaggttggtcccttatgttt 48171501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 6043449 - 6043493
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagtt 229  Q
    |||||||||||||||||||||||  ||||| |||||||| |||||    
T  6043449 ttaattgcatgtttggtcccttatatttattttaggttttaagtt 6043493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 40744220 - 40744172
Alignment:
Q  187 aattgcatgtttggtcccttacgtttatattaggtttcaagttagtctc 235  Q
    |||||||| ||||| ||| ||||||||| |||||||||||||| |||||    
T  40744220 aattgcatttttggacccatacgtttattttaggtttcaagttggtctc 40744172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 42604631 - 42604675
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagtt 229  Q
    ||||||||||||||| ||||||| |||||| |||| |||||||||    
T  42604631 ttaattgcatgtttgatcccttatgtttattttagttttcaagtt 42604675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 42605041 - 42604997
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagtt 229  Q
    ||||||||||||||| ||||||| |||||| |||| |||||||||    
T  42605041 ttaattgcatgtttgatcccttatgtttattttagttttcaagtt 42604997  T

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Target: scaffold0015 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 47487 - 47429
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    ||||||||||||||||||||||| |||||| |||||||| ||||| ||| | |||||||    
T  47487 ttaattgcatgtttggtcccttatgtttattttaggttttaagttggtcgcttatgttt 47429  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 24188281 - 24188223
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    ||||||||||||||| || |||| ||||||||||||||||||||| ||| | |||||||    
T  24188281 ttaattgcatgtttgatcgcttatgtttatattaggtttcaagttggtcccttatgttt 24188223  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 243
Target Start/End: Complemental strand, 7460954 - 7460895
Alignment:
Q  184 tttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    |||||||||||||||| ||||||| |||||| |||| ||||||||| ||| | |||||||    
T  7460954 tttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcacttatgttt 7460895  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 17813977 - 17814035
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    |||||| |||||||| || |||| |||||| |||||||||||||| ||||| |||||||    
T  17813977 ttaattccatgtttgatctcttatgtttattttaggtttcaagttggtctcttatgttt 17814035  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 229
Target Start/End: Complemental strand, 34536104 - 34536051
Alignment:
Q  176 aaataatgtttaattgcatgtttggtcccttacgtttatattaggtttcaagtt 229  Q
    |||||| ||||||||||||||||| ||||||| |||||| |||| ||| |||||    
T  34536104 aaataaagtttaattgcatgtttgatcccttatgtttatcttagtttttaagtt 34536051  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 48618893 - 48618811
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgtttctaacctttcaagttgatctctta 267  Q
    ||||||||||||||| |||||||  ||||| ||||| |||||||| ||||| |||||||  ||| ||| |||||| |||||||    
T  48618893 ttaattgcatgtttgatcccttatatttattttaggcttcaagttggtctcttatgtttgaaacattttaagttggtctctta 48618811  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 33241847 - 33241891
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagtt 229  Q
    ||||||||||| ||||||||||| |||||| ||||||||||||||    
T  33241847 ttaattgcatggttggtcccttaagtttattttaggtttcaagtt 33241891  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 22793679 - 22793635
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagtt 229  Q
    ||||||||||||||| ||||||| |||||| ||||||||||||||    
T  22793679 ttaattgcatgtttgatcccttatgtttattttaggtttcaagtt 22793635  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 184 - 271
Target Start/End: Original strand, 6209833 - 6209920
Alignment:
Q  184 tttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgtttctaacctttcaagttgatctcttatgtt 271  Q
    |||||||  |||||||||||||||||||||| ||||||||||| || |||   |||||||  ||  ||||||||| ||||||| ||||    
T  6209833 tttaattatatgtttggtcccttacgtttattttaggtttcaattttgtcatttatgttttaaaagtttcaagtttatctcttttgtt 6209920  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 271
Target Start/End: Original strand, 22793302 - 22793388
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgtttctaacctttcaagttgatctcttatgtt 271  Q
    ||||||| || ||||| |||||| |||||| |||||||||||||| ||| | |||||||  ||  |||||||||| || ||||||||    
T  22793302 ttaattggatatttggccccttatgtttattttaggtttcaagttggtcccttatgttttaaaagtttcaagttggtcccttatgtt 22793388  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 229
Target Start/End: Original strand, 28645267 - 28645313
Alignment:
Q  183 gtttaattgcatgtttggtcccttacgtttatattaggtttcaagtt 229  Q
    ||||||||||||||||||||||||||  |||| ||| ||||||||||    
T  28645267 gtttaattgcatgtttggtcccttacacttattttatgtttcaagtt 28645313  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 34829967 - 34829909
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    ||||||||||||||| || |||| |||||| |||||||| ||||| ||||| |||||||    
T  34829967 ttaattgcatgtttgatctcttatgtttattttaggttttaagttggtctcttatgttt 34829909  T

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Target: scaffold0548 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 3443 - 3385
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    ||||||||||||||| ||||||| |||||| |||| ||||||||| ||| | |||||||    
T  3443 ttaattgcatgtttgatcccttatgtttattttagttttcaagttggtcccttatgttt 3385  T

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Target: scaffold0400 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 9984 - 9926
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    ||||||||||||||| || |||| |||||| |||||||| ||||| ||||| |||||||    
T  9984 ttaattgcatgtttgatctcttatgtttattttaggttttaagttggtctcttatgttt 9926  T

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Target: scaffold0365 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Complemental strand, 10627 - 10569
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    ||||||||||||||| || |||| |||||| |||||||| ||||| ||||| |||||||    
T  10627 ttaattgcatgtttgatctcttatgtttattttaggttttaagttggtctcttatgttt 10569  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 229
Target Start/End: Complemental strand, 25508218 - 25508172
Alignment:
Q  183 gtttaattgcatgtttggtcccttacgtttatattaggtttcaagtt 229  Q
    ||||||||||||||||||||||||| ||| || |||||||| |||||    
T  25508218 gtttaattgcatgtttggtcccttaagttgattttaggttttaagtt 25508172  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 33992336 - 33992394
Alignment:
Q  185 ttaattgcatgtttggtcccttacgtttatattaggtttcaagttagtctcctatgttt 243  Q
    ||||||||||||||| ||||||| |||||| |||| ||||||||| ||| | |||||||    
T  33992336 ttaattgcatgtttgatcccttatgtttattttagttttcaagttcgtcccttatgttt 33992394  T

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