View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_high_23 (Length: 384)
Name: NF11625_high_23
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 13 - 338
Target Start/End: Complemental strand, 40263378 - 40263046
Alignment:
| Q |
13 |
catcaaggacaaattgcatcattgtaattttattgttaaccataagaaaagatctagtacataactcgttaaaagagaggaggaaaggtgtacactaatt |
112 |
Q |
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| T |
40263378 |
catcgaggacaaattgcatcattgtaattttattgttaaccataagaaaagatctagtacataactcgttaaaagagaggaggaaaggtgtacactaatt |
40263279 |
T |
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| Q |
113 |
ataagtaacatacctcagtgtagaa-------aaagaggaaggagaaatatggtactcttcgccacaacgaagagataacat-acttttatgcacatagt |
204 |
Q |
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| T |
40263278 |
gtaagtaacatacctaagtgtagaactcgtaaaaagaggaaggagaaatatggtactcttcgccacaacgaagagataacatgacttttatgcacatagt |
40263179 |
T |
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| Q |
205 |
gagtgtgatataatgtttttgaggtgagacgagaccccaactcatgagacatattctacgtagtttcatagttttattagagtttgcaaatgagtttcaa |
304 |
Q |
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|||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
40263178 |
gagtgtaatataatgtttttgaggtgagacgagaccc-aactcatgagacatattctacgtagtttcataattttattagagtttgcaaatgagtttcaa |
40263080 |
T |
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| Q |
305 |
gagagagcatgctaagtttacgaagttatactta |
338 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
40263079 |
gagagagcatgctaagtttacgaagttatactta |
40263046 |
T |
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