View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_high_3 (Length: 682)
Name: NF11625_high_3
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 23 - 477
Target Start/End: Original strand, 31600737 - 31601189
Alignment:
| Q |
23 |
aaaacgagaataaaatagatatgaatatatgaaaatattatttcatgttgaagatgtaaaacgataattaaactgatacaaatcaattatgttaaaacct |
122 |
Q |
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| T |
31600737 |
aaaacgagaataaaatagatatgaatatatgaaaatattatttcatgttgaagatgtaaaacgataattaaactgatacaaatcaattatgctaaaacct |
31600836 |
T |
|
| Q |
123 |
catacaatgtgtaggatggagagaatattgtttcttttgagagtgtaactgggtgtgggggttgacctgaaaaacaattctacaaaataaatgcttcttt |
222 |
Q |
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| T |
31600837 |
catacaatgtgtaggatggagagaatattgtttcttttgagagtgtaactgggtgtgggggttgacctgaaaaacaattctacaaattaaatgcttcttt |
31600936 |
T |
|
| Q |
223 |
atgtttgctcaatatggcaaagcagtatctctgtcgcaatatgaacttttgttttacatgtgcccatgcttcaatagttctacaatttgtggtttggttg |
322 |
Q |
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| T |
31600937 |
atgtttgctcaatatggcaaagcagtatctctgtcgcaatatgaacttttgttttacatgtgcccatgcttcaatagttctacaatttgtggtttagttg |
31601036 |
T |
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| Q |
323 |
agatggtatttattggaaccattaatagtaaaggtttgagaatgtggtttaaaatttaaattttactgtagcaactaacaactaattttgtttcaatnnn |
422 |
Q |
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| T |
31601037 |
agatggtatttatgggaaccattaatagtaaaggtttgagaatgtggtttaaaatttaaattttactgtagcaactaacaactaattttgtttcaat--a |
31601134 |
T |
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| Q |
423 |
nnnnnnncgtttgtctattcaaaataaaattcaaactttagttaacatatgagta |
477 |
Q |
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| T |
31601135 |
aaaaaaacgtttgtctattcaaaataaaattcaaactttagttaacatatgagta |
31601189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 572 - 676
Target Start/End: Original strand, 31601267 - 31601371
Alignment:
| Q |
572 |
aattgacctcacatgtttaataaactctactaataatgaattgttcaagaaaatttgagttcgattgttaggtaaaataattctcggtcatatgtttctt |
671 |
Q |
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|||||| ||||| |||||||||| |||| ||||||| ||||||| |||||||||||| | ||||||| |||| || |||| || |||||| |||||| |
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| T |
31601267 |
aattgatctcacgtgtttaataagctctcctaataacaaattgtttaagaaaatttgacattgattgttgggtagaacaattttcaatcatatttttctt |
31601366 |
T |
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| Q |
672 |
ctctc |
676 |
Q |
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||||| |
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| T |
31601367 |
ctctc |
31601371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 9190982 - 9190949
Alignment:
| Q |
223 |
atgtttgctcaatatggcaaagcagtatctctgt |
256 |
Q |
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| T |
9190982 |
atgtttgctcaatatggcaaagcagtatctctgt |
9190949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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