View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11625_high_31 (Length: 326)

Name: NF11625_high_31
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11625_high_31
NF11625_high_31
[»] chr6 (4 HSPs)
chr6 (58-322)||(785156-785420)
chr6 (59-94)||(19369889-19369924)
chr6 (58-88)||(1334744-1334774)
chr6 (56-94)||(26178564-26178602)
[»] chr3 (2 HSPs)
chr3 (1-94)||(3180743-3180836)
chr3 (55-93)||(34834869-34834907)
[»] chr5 (3 HSPs)
chr5 (15-89)||(20946556-20946630)
chr5 (58-93)||(9031879-9031914)
chr5 (66-94)||(7621170-7621198)
[»] chr4 (4 HSPs)
chr4 (55-91)||(39619045-39619081)
chr4 (55-96)||(37496795-37496836)
chr4 (60-96)||(4790785-4790821)
chr4 (58-94)||(5998899-5998935)
[»] chr2 (2 HSPs)
chr2 (58-96)||(43585943-43585981)
chr2 (55-96)||(14450705-14450746)
[»] scaffold0504 (1 HSPs)
scaffold0504 (55-96)||(8640-8681)
[»] chr7 (3 HSPs)
chr7 (56-94)||(25956525-25956563)
chr7 (59-91)||(10702456-10702488)
chr7 (55-91)||(48963995-48964031)
[»] scaffold0122 (1 HSPs)
scaffold0122 (58-94)||(10247-10283)


Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 58 - 322
Target Start/End: Complemental strand, 785420 - 785156
Alignment:
Q  58 ggacacaccttcaatcagaagtgtccgtgcaacagaggtggttacatagtgtaacttttacaaaattacactggttcaacttagtttaggtaaataatca 157  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785420 ggacacaccttcaatcagaagtgtccgtgcaacagaggtggttacatagtgtaacttttacaaaattacactggttcaacttagtttaggtaaataatca 785321  T
Q  158 tgatgctaaacatacacatagttttaactgcaactgtttgcgttgtggagaaataaatttgatgttgatgtctagattgagttgctgtctattagatgac 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785320 tgatgctaaacatacacatagttttaactgcaactgtttgcgttgtggagaaataaatttgatgttgatgtctagattgagttgctgtctattagatgac 785221  T
Q  258 tttgaaatgatattattcaaacattttggagaattacnnnnnnncttatattttctgtgctcctc 322  Q
    |||||||||||||||||||||||||||||||||||||       |||||||||| ||||||||||    
T  785220 tttgaaatgatattattcaaacattttggagaattactttttttcttatattttttgtgctcctc 785156  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 59 - 94
Target Start/End: Original strand, 19369889 - 19369924
Alignment:
Q  59 gacacaccttcaatcagaagtgtccgtgcaacagag 94  Q
    ||||| ||||||||||||||||||||||||||||||    
T  19369889 gacacgccttcaatcagaagtgtccgtgcaacagag 19369924  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 88
Target Start/End: Original strand, 1334744 - 1334774
Alignment:
Q  58 ggacacaccttcaatcagaagtgtccgtgca 88  Q
    |||||||||||||||||||||||||||||||    
T  1334744 ggacacaccttcaatcagaagtgtccgtgca 1334774  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 26178564 - 26178602
Alignment:
Q  56 cgggacacaccttcaatcagaagtgtccgtgcaacagag 94  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  26178564 cgggacataccttcaatcagaagtgtccgtgcatcagag 26178602  T

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Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 3180836 - 3180743
Alignment:
Q  1 acactgacacgtctacaatgataaaactttaagaaaatgacataggttatgattccgggacacaccttcaatcagaagtgtccgtgcaacagag 94  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||    
T  3180836 acactgacacgtctacaatgataaaattttaagaaaatgacataggttatgattccgggacacacgttcaatcagaagtgtcagtgcaatagag 3180743  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 93
Target Start/End: Complemental strand, 34834907 - 34834869
Alignment:
Q  55 ccgggacacaccttcaatcagaagtgtccgtgcaacaga 93  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  34834907 ccgggacacgccttcaatcagaagtgtccgtgcaacaga 34834869  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 20946556 - 20946630
Alignment:
Q  15 acaatgataaaactttaagaaaatgacataggttatgattccgggacacaccttcaatcagaagtgtccgtgcaa 89  Q
    |||||||||||| ||| ||||||||||||| |||||||||  ||||||||||||  |||||||| ||| ||||||    
T  20946556 acaatgataaaattttgagaaaatgacataagttatgattttgggacacaccttagatcagaagcgtcggtgcaa 20946630  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 58 - 93
Target Start/End: Complemental strand, 9031914 - 9031879
Alignment:
Q  58 ggacacaccttcaatcagaagtgtccgtgcaacaga 93  Q
    |||||| |||||||||||||||||||||||||||||    
T  9031914 ggacacgccttcaatcagaagtgtccgtgcaacaga 9031879  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 94
Target Start/End: Complemental strand, 7621198 - 7621170
Alignment:
Q  66 cttcaatcagaagtgtccgtgcaacagag 94  Q
    |||||||||||||||||||||||||||||    
T  7621198 cttcaatcagaagtgtccgtgcaacagag 7621170  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 39619081 - 39619045
Alignment:
Q  55 ccgggacacaccttcaatcagaagtgtccgtgcaaca 91  Q
    |||||||||||||||||||||||||||||||||||||    
T  39619081 ccgggacacaccttcaatcagaagtgtccgtgcaaca 39619045  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 37496795 - 37496836
Alignment:
Q  55 ccgggacacaccttcaatcagaagtgtccgtgcaacagaggt 96  Q
    ||||||||| |||||||||| |||||||||||||||||||||    
T  37496795 ccgggacacgccttcaatcataagtgtccgtgcaacagaggt 37496836  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 4790785 - 4790821
Alignment:
Q  60 acacaccttcaatcagaagtgtccgtgcaacagaggt 96  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  4790785 acacaccttcaatcagaagtgtcggtgctacagaggt 4790821  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 5998899 - 5998935
Alignment:
Q  58 ggacacaccttcaatcagaagtgtccgtgcaacagag 94  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  5998899 ggacacaccttcaatcataagtgtcggtgcaacagag 5998935  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 96
Target Start/End: Complemental strand, 43585981 - 43585943
Alignment:
Q  58 ggacacaccttcaatcagaagtgtccgtgcaacagaggt 96  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  43585981 ggacacaccttcaatcagaagtgttcgtgcaacagaggt 43585943  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 14450746 - 14450705
Alignment:
Q  55 ccgggacacaccttcaatcagaagtgtccgtgcaacagaggt 96  Q
    |||||||||  |||||||||||||||||||||||||||||||    
T  14450746 ccgggacacgtcttcaatcagaagtgtccgtgcaacagaggt 14450705  T

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Target: scaffold0504 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 8681 - 8640
Alignment:
Q  55 ccgggacacaccttcaatcagaagtgtccgtgcaacagaggt 96  Q
    ||||||||  ||||||||||||||||||||||||||||||||    
T  8681 ccgggacatgccttcaatcagaagtgtccgtgcaacagaggt 8640  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 94
Target Start/End: Original strand, 25956525 - 25956563
Alignment:
Q  56 cgggacacaccttcaatcagaagtgtccgtgcaacagag 94  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  25956525 cgggacacgccttcaatcagaagtgtccgtgcaatagag 25956563  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 10702488 - 10702456
Alignment:
Q  59 gacacaccttcaatcagaagtgtccgtgcaaca 91  Q
    |||||||||||||||||||||||| ||||||||    
T  10702488 gacacaccttcaatcagaagtgtcggtgcaaca 10702456  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 91
Target Start/End: Complemental strand, 48964031 - 48963995
Alignment:
Q  55 ccgggacacaccttcaatcagaagtgtccgtgcaaca 91  Q
    |||||||| |||||||||||||||||||| |||||||    
T  48964031 ccgggacataccttcaatcagaagtgtccatgcaaca 48963995  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 10283 - 10247
Alignment:
Q  58 ggacacaccttcaatcagaagtgtccgtgcaacagag 94  Q
    ||||||||||||||||||||||||| |||||| ||||    
T  10283 ggacacaccttcaatcagaagtgtctgtgcaagagag 10247  T

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