View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11625_high_4 (Length: 667)

Name: NF11625_high_4
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11625_high_4
NF11625_high_4
[»] chr4 (20 HSPs)
chr4 (428-650)||(35902952-35903177)
chr4 (531-629)||(4116460-4116558)
chr4 (381-427)||(35903632-35903678)
chr4 (375-426)||(16904966-16905017)
chr4 (375-426)||(37590818-37590869)
chr4 (375-426)||(44376093-44376144)
chr4 (375-426)||(46256198-46256249)
chr4 (375-426)||(12090473-12090524)
chr4 (375-426)||(30824936-30824987)
chr4 (375-426)||(33139485-33139536)
chr4 (375-426)||(37651830-37651881)
chr4 (375-426)||(47142814-47142865)
chr4 (375-426)||(52434788-52434839)
chr4 (375-425)||(19745223-19745273)
chr4 (375-425)||(19794533-19794583)
chr4 (375-425)||(23976720-23976770)
chr4 (375-421)||(45977004-45977050)
chr4 (377-426)||(16917904-16917953)
chr4 (377-426)||(39058373-39058422)
chr4 (375-435)||(18209666-18209726)
[»] chr5 (22 HSPs)
chr5 (40-205)||(36001654-36001822)
chr5 (204-250)||(36001842-36001888)
chr5 (40-108)||(36012872-36012940)
chr5 (40-206)||(36015599-36015763)
chr5 (375-426)||(20655063-20655114)
chr5 (379-426)||(24223182-24223229)
chr5 (375-426)||(25099250-25099301)
chr5 (375-426)||(25158340-25158391)
chr5 (375-426)||(33375928-33375979)
chr5 (375-426)||(2398956-2399007)
chr5 (375-426)||(10729456-10729507)
chr5 (375-426)||(16526320-16526371)
chr5 (375-426)||(20874852-20874903)
chr5 (375-426)||(34107352-34107403)
chr5 (375-426)||(34110816-34110867)
chr5 (375-426)||(38246879-38246930)
chr5 (375-426)||(40177205-40177256)
chr5 (375-429)||(30088716-30088770)
chr5 (375-429)||(30096290-30096344)
chr5 (204-268)||(36013037-36013099)
chr5 (204-253)||(36015795-36015844)
chr5 (375-427)||(8179767-8179819)
[»] scaffold0007 (2 HSPs)
scaffold0007 (530-629)||(79244-79343)
scaffold0007 (394-436)||(79105-79147)
[»] chr6 (18 HSPs)
chr6 (533-630)||(32263184-32263282)
chr6 (375-429)||(8657078-8657132)
chr6 (537-587)||(5339313-5339363)
chr6 (375-426)||(3593057-3593108)
chr6 (375-420)||(8539723-8539768)
chr6 (543-627)||(9853340-9853424)
chr6 (375-426)||(1405577-1405628)
chr6 (375-426)||(2266940-2266991)
chr6 (375-442)||(6300723-6300790)
chr6 (375-442)||(6307533-6307600)
chr6 (375-426)||(12597279-12597330)
chr6 (375-426)||(13533931-13533982)
chr6 (375-426)||(19997829-19997880)
chr6 (375-426)||(33646106-33646157)
chr6 (376-426)||(2005592-2005642)
chr6 (375-421)||(15044891-15044937)
chr6 (375-425)||(33289084-33289134)
chr6 (375-435)||(162683-162743)
[»] chr3 (19 HSPs)
chr3 (460-579)||(46918005-46918127)
chr3 (530-629)||(46921593-46921692)
chr3 (375-429)||(37099705-37099759)
chr3 (375-426)||(4584448-4584499)
chr3 (375-426)||(6460182-6460233)
chr3 (531-582)||(21746516-21746567)
chr3 (375-426)||(26948962-26949013)
chr3 (375-426)||(36076468-36076519)
chr3 (375-426)||(1941734-1941785)
chr3 (375-426)||(3898586-3898637)
chr3 (375-426)||(12264364-12264415)
chr3 (375-426)||(31488575-31488626)
chr3 (375-426)||(34121519-34121570)
chr3 (375-426)||(38653941-38653992)
chr3 (375-426)||(43363625-43363676)
chr3 (375-426)||(49672726-49672777)
chr3 (375-426)||(55041597-55041648)
chr3 (378-442)||(13364039-13364103)
chr3 (381-421)||(39146609-39146649)
[»] chr8 (21 HSPs)
chr8 (548-629)||(35615276-35615356)
chr8 (533-591)||(24467536-24467594)
chr8 (375-429)||(405368-405422)
chr8 (375-426)||(39997855-39997906)
chr8 (375-429)||(17695594-17695648)
chr8 (375-429)||(44831148-44831202)
chr8 (375-419)||(23353636-23353680)
chr8 (375-426)||(995829-995880)
chr8 (375-426)||(6299034-6299085)
chr8 (375-426)||(10478101-10478152)
chr8 (375-426)||(11142631-11142682)
chr8 (375-426)||(11725354-11725405)
chr8 (375-426)||(15961296-15961347)
chr8 (375-426)||(18175545-18175596)
chr8 (375-426)||(18997864-18997915)
chr8 (375-426)||(28583019-28583070)
chr8 (375-426)||(30473898-30473949)
chr8 (375-426)||(32110875-32110926)
chr8 (375-421)||(18842073-18842119)
chr8 (375-421)||(44837078-44837124)
chr8 (378-426)||(35122339-35122387)
[»] scaffold0896 (1 HSPs)
scaffold0896 (375-429)||(1078-1132)
[»] chr7 (16 HSPs)
chr7 (375-425)||(31097877-31097927)
chr7 (375-429)||(32661030-32661084)
chr7 (530-591)||(21314327-21314388)
chr7 (530-591)||(40674345-40674406)
chr7 (383-439)||(21681060-21681116)
chr7 (375-426)||(13786334-13786385)
chr7 (375-426)||(16376559-16376610)
chr7 (375-426)||(24924243-24924294)
chr7 (375-426)||(21670145-21670196)
chr7 (375-426)||(21804586-21804637)
chr7 (375-426)||(27903431-27903482)
chr7 (375-426)||(33916961-33917012)
chr7 (375-426)||(38163353-38163404)
chr7 (375-418)||(40969063-40969106)
chr7 (375-426)||(42242168-42242219)
chr7 (376-429)||(21713635-21713688)
[»] chr2 (11 HSPs)
chr2 (375-425)||(31572446-31572496)
chr2 (530-627)||(42947191-42947288)
chr2 (375-426)||(8700425-8700476)
chr2 (375-426)||(19596377-19596428)
chr2 (375-426)||(6120716-6120767)
chr2 (375-426)||(18351715-18351766)
chr2 (375-426)||(27944810-27944861)
chr2 (375-426)||(31424173-31424224)
chr2 (375-426)||(41664674-41664725)
chr2 (375-426)||(44902245-44902296)
chr2 (386-426)||(692227-692267)
[»] chr1 (18 HSPs)
chr1 (375-429)||(28947468-28947522)
chr1 (530-627)||(21219837-21219934)
chr1 (352-421)||(14009850-14009915)
chr1 (530-582)||(35240018-35240070)
chr1 (375-426)||(1231960-1232011)
chr1 (375-426)||(35614231-35614282)
chr1 (375-429)||(29387901-29387955)
chr1 (375-420)||(18855247-18855292)
chr1 (375-426)||(4266545-4266596)
chr1 (375-426)||(18706523-18706574)
chr1 (375-426)||(29942182-29942233)
chr1 (375-426)||(31018214-31018265)
chr1 (375-426)||(34888700-34888751)
chr1 (375-426)||(38913761-38913812)
chr1 (375-426)||(50326165-50326216)
chr1 (375-429)||(52957037-52957091)
chr1 (375-408)||(2951380-2951413)
chr1 (375-420)||(23482721-23482766)
[»] scaffold0031 (1 HSPs)
scaffold0031 (375-426)||(46438-46489)
[»] scaffold0515 (1 HSPs)
scaffold0515 (375-421)||(6075-6121)
[»] scaffold0306 (1 HSPs)
scaffold0306 (375-421)||(6085-6131)


Alignment Details
Target: chr4 (Bit Score: 131; Significance: 1e-67; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 428 - 650
Target Start/End: Complemental strand, 35903177 - 35902952
Alignment:
Q  428 ttgaatagcacaattgcactgtgatattctaatgtcatcattttgagcacaaatataatcaaagtttttcatgcctacaatttacgaaatannnnnnnaa 527  Q
    ||||||||||||||||||     | ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||       ||    
T  35903177 ttgaatagcacaattgcaactacaaattttaatgtcatcattttgagcacaaatacaatcaaagtttttcatgcctacaatttatgaaatatttctttaa 35903078  T
Q  528 acac---attcgaagtactatcaatgcaaataccatcttcgtctattagcaaaattttcagaccattctttgaagtcacttctgatattgctacataaag 624  Q
    ||||   ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||    
T  35903077 acactacattcgaagtactatcaatgcaaatatcatcttcgtctattagcaaaattttcagaccattctttaaagtaacttttgatattgctacataaag 35902978  T
Q  625 ttgacatgtagttgtaacatgtagta 650  Q
    |||||||||| || ||||||||||||    
T  35902977 ttgacatgtaattttaacatgtagta 35902952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 531 - 629
Target Start/End: Original strand, 4116460 - 4116558
Alignment:
Q  531 cattcgaagtactatcaatgcaaataccatcttcgtctattagcaaaattttcagaccattctttgaagtcacttctgatattgctacataaagttgac 629  Q
    |||| ||||||||||||||||||| ||||| ||| ||||||||||| ||||||||||| ||  |||| || |    |||| ||||||||||||||||||    
T  4116460 catttgaagtactatcaatgcaaacaccattttcatctattagcaagattttcagaccgtttcttgaggtaatcgttgatgttgctacataaagttgac 4116558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 381 - 427
Target Start/End: Complemental strand, 35903678 - 35903632
Alignment:
Q  381 tgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaa 427  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||    
T  35903678 tgccgcacggatcatatacatcgtaaatgtagtagacaaaagcaaaa 35903632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 16904966 - 16905017
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  16904966 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 16905017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 37590818 - 37590869
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  37590818 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaatcaaa 37590869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 44376093 - 44376144
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  44376093 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 44376144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 46256249 - 46256198
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  46256249 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 46256198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 12090473 - 12090524
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  12090473 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 12090524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 30824936 - 30824987
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  30824936 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 30824987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 33139485 - 33139536
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  33139485 ccgtgctgccgcacgggtcatatacattgtagatttagtagacaaaaacaaa 33139536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 37651881 - 37651830
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  37651881 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 37651830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 47142814 - 47142865
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    |||||||||||||| |||||||||||| ||| ||| ||||||||||| ||||    
T  47142814 ccgtgctgccgcactggtcatatacattgtagatgtagtagacaaaaacaaa 47142865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 52434839 - 52434788
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  52434839 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 52434788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 19745273 - 19745223
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaa 425  Q
    |||||| |||||||||||||||||||| |||| || |||||||||| ||||    
T  19745273 ccgtgcggccgcacgggtcatatacattgtaagtgtagtagacaaaggcaa 19745223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 425
Target Start/End: Original strand, 19794533 - 19794583
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaa 425  Q
    |||||| |||||||||||||||||||| |||| || |||||||||| ||||    
T  19794533 ccgtgcggccgcacgggtcatatacattgtaagtgtagtagacaaaggcaa 19794583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 425
Target Start/End: Original strand, 23976720 - 23976770
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaa 425  Q
    |||||||||||||||||||||||| || |||| || |||| ||||||||||    
T  23976720 ccgtgctgccgcacgggtcatatatattgtaagtgtagtacacaaaagcaa 23976770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 45977004 - 45977050
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaa 421  Q
    ||||||||| ||||||||||||||||||||| ||| |||||| ||||    
T  45977004 ccgtgctgctgcacgggtcatatacatcgtagatgtagtagataaaa 45977050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 16917904 - 16917953
Alignment:
Q  377 gtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  16917904 gtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 16917953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 426
Target Start/End: Original strand, 39058373 - 39058422
Alignment:
Q  377 gtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  39058373 gtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 39058422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 375 - 435
Target Start/End: Complemental strand, 18209726 - 18209666
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaattgaatag 435  Q
    |||||||||||||||||||||||||||   ||||| |||||   ||||||||||| |||||    
T  18209726 ccgtgctgccgcacgggtcatatacattcaaaatgtagtaggtcaaagcaaaattcaatag 18209666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 4e-46; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 40 - 205
Target Start/End: Original strand, 36001654 - 36001822
Alignment:
Q  40 ccatcaacaatgcattttccgacagatcaagtgcattgttgacggttcaaacactctcatcagaactagcttctttacattcacggattaagaagctcga 139  Q
    |||||||||| || ||| | ||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  36001654 ccatcaacaacgcttttgctgaccgatcaagtgcattgttgacagttcaaacactttcatcagaactagcttctttacattcacggattgagaagctcga 36001753  T
Q  140 atttgct---tccataatatttggtggagacaagtcttggttgtagaaaattgaagagttgaaagaagc 205  Q
    | |||||   |||| |||||||||||||||||||||| || ||  |||||||||||| |||||||||||    
T  36001754 agttgcttcatccagaatatttggtggagacaagtctaggatgcggaaaattgaagaattgaaagaagc 36001822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 204 - 250
Target Start/End: Original strand, 36001842 - 36001888
Alignment:
Q  204 gctaaaatatgtgcagatagagagtatgaacgaatcaaggtagcata 250  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||    
T  36001842 gctaaaatttgtgcagatagagagtatgaacgaatcaaggtaacata 36001888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 108
Target Start/End: Original strand, 36012872 - 36012940
Alignment:
Q  40 ccatcaacaatgcattttccgacagatcaagtgcattgttgacggttcaaacactctcatcagaactag 108  Q
    ||||||||||||||  ||||||   || |||||||||||||| |||||||||||||| |||||||||||    
T  36012872 ccatcaacaatgcaacttccgatcaatgaagtgcattgttgatggttcaaacactcttatcagaactag 36012940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 206
Target Start/End: Original strand, 36015599 - 36015763
Alignment:
Q  40 ccatcaacaatgcattttccgacagatcaagtgcattgttgacggttcaaacactctcatcagaactagcttctttacattcacggattaagaagctcga 139  Q
    ||||||| ||||||||||||||| ||||||||||||||  ||  |||||||||      ||||||| | |||||||| ||||||  ||| ||||||||||    
T  36015599 ccatcaataatgcattttccgactgatcaagtgcattggcgatagttcaaaca-----ttcagaac-aacttctttaaattcactaattgagaagctcga 36015692  T
Q  140 atttgct---tccataat-atttggtggagacaagtcttggttgtagaaaattgaagagttgaaagaagct 206  Q
    | |||||   |||| ||| |||||  ||||||| |||| |||||  ||||||||||| |||||||||||||    
T  36015693 agttgcttcatccagaataatttgacggagacaggtctaggttgcggaaaattgaagtgttgaaagaagct 36015763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 20655063 - 20655114
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  20655063 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 20655114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 379 - 426
Target Start/End: Original strand, 24223182 - 24223229
Alignment:
Q  379 gctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||||||||||| ||||    
T  24223182 gctgccgcacgggtcatatacatcgtagatgtagtagacaaaaacaaa 24223229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 25099250 - 25099301
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  25099250 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 25099301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 25158340 - 25158391
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  25158340 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 25158391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 33375979 - 33375928
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  33375979 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 33375928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 2398956 - 2399007
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  2398956 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 2399007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 10729456 - 10729507
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  10729456 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 10729507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 16526320 - 16526371
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  16526320 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 16526371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 20874903 - 20874852
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  20874903 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 20874852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 34107352 - 34107403
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  34107352 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34107403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 34110867 - 34110816
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  34110867 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34110816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 38246879 - 38246930
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  38246879 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38246930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 40177256 - 40177205
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  40177256 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 40177205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 429
Target Start/End: Original strand, 30088716 - 30088770
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaatt 429  Q
    ||||||||||||||||||||||||||| |||| |   |||||||||| |||||||    
T  30088716 ccgtgctgccgcacgggtcatatacattgtaagtattgtagacaaaaacaaaatt 30088770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 429
Target Start/End: Original strand, 30096290 - 30096344
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaatt 429  Q
    |||||||||||||||| |||||||||| |||| |   ||||||||||||||||||    
T  30096290 ccgtgctgccgcacggatcatatacattgtaagtattgtagacaaaagcaaaatt 30096344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 268
Target Start/End: Original strand, 36013037 - 36013099
Alignment:
Q  204 gctaaaatatgtgcagatagagagtatgaacgaatcaaggtagcatatagatatattttttgttt 268  Q
    |||||||| |||||||||||||  |||||| ||||||||||| || |||| || |||||||||||    
T  36013037 gctaaaatttgtgcagatagag--tatgaatgaatcaaggtaacaaataggtacattttttgttt 36013099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 253
Target Start/End: Original strand, 36015795 - 36015844
Alignment:
Q  204 gctaaaatatgtgcagatagagagtatgaacgaatcaaggtagcatatag 253  Q
    |||||||| |||| ||||||||| ||| |||||||||||||| |||||||    
T  36015795 gctaaaatttgtgaagatagagaatatcaacgaatcaaggtaacatatag 36015844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 375 - 427
Target Start/End: Original strand, 8179767 - 8179819
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaa 427  Q
    |||||||||||||||| ||||||| || ||| ||| ||||||| |||||||||    
T  8179767 ccgtgctgccgcacggatcatatatattgtagatgtagtagaccaaagcaaaa 8179819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 530 - 629
Target Start/End: Original strand, 79244 - 79343
Alignment:
Q  530 acattcgaagtactatcaatgcaaataccatcttcgtctattagcaaaattttcagaccattctttgaagtcacttctgatattgctacataaagttgac 629  Q
    |||||||| ||| |||||||||||| || ||| || ||||||||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  79244 acattcgatgtaatatcaatgcaaagactatcatcatctattagcgaaattttcagaccattccttgaagtaactcctgatattgctacataaagttgac 79343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 394 - 436
Target Start/End: Original strand, 79105 - 79147
Alignment:
Q  394 atatacatcgtaaatgaagtagacaaaagcaaaattgaatagc 436  Q
    |||||||| ||||||| ||||||||||||||||||| ||||||    
T  79105 atatacattgtaaatgtagtagacaaaagcaaaatttaatagc 79147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 533 - 630
Target Start/End: Complemental strand, 32263282 - 32263184
Alignment:
Q  533 ttcgaagtactatca-atgcaaataccatcttcgtctattagcaaaattttcagaccattctttgaagtcacttctgatattgctacataaagttgaca 630  Q
    |||||||||||| || ||||||| ||||||||| ||||||||||||||||||| |||| || ||||||| |||  ||||||||||||||||||||||||    
T  32263282 ttcgaagtactaccacatgcaaagaccatcttcatctattagcaaaattttcaaaccactcattgaagtaactcttgatattgctacataaagttgaca 32263184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 375 - 429
Target Start/End: Original strand, 8657078 - 8657132
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaatt 429  Q
    ||||||||||||||||||||||||||| |||| || |||||||||||||||||||    
T  8657078 ccgtgctgccgcacgggtcatatacattgtaagtgtagtagacaaaagcaaaatt 8657132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 537 - 587
Target Start/End: Original strand, 5339313 - 5339363
Alignment:
Q  537 aagtactatcaatgcaaataccatcttcgtctattagcaaaattttcagac 587  Q
    |||||||||||||||||| ||||||||| |||||||||| |||||||||||    
T  5339313 aagtactatcaatgcaaagaccatcttcatctattagcagaattttcagac 5339363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 3593108 - 3593057
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  3593108 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 3593057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 375 - 420
Target Start/End: Complemental strand, 8539768 - 8539723
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaa 420  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||    
T  8539768 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaa 8539723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 543 - 627
Target Start/End: Complemental strand, 9853424 - 9853340
Alignment:
Q  543 tatcaatgcaaataccatcttcgtctattagcaaaattttcagaccattctttgaagtcacttctgatattgctacataaagttg 627  Q
    |||||||||| || || ||||| | || ||||||||||||||| |||| | ||||||| |||   ||||||||||||||||||||    
T  9853424 tatcaatgcacatgccgtcttcatatagtagcaaaattttcaggccatcccttgaagtaactctcgatattgctacataaagttg 9853340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 1405577 - 1405628
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| |||||| |||| ||||    
T  1405577 ccgtgctgccgcacgggtcatatacattgtagatgtagtagataaaaacaaa 1405628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 2266991 - 2266940
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  2266991 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 2266940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 442
Target Start/End: Original strand, 6300723 - 6300790
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaattgaatagcacaatt 442  Q
    ||||||||||||||||||||||||||| ||| ||  ||||| ||||| |||| || |||||| |||||    
T  6300723 ccgtgctgccgcacgggtcatatacattgtatatctagtaggcaaaaacaaagtttaatagctcaatt 6300790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 442
Target Start/End: Original strand, 6307533 - 6307600
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaattgaatagcacaatt 442  Q
    ||||||||||||||||||||||||||| ||| ||  ||||| ||||| |||| || |||||| |||||    
T  6307533 ccgtgctgccgcacgggtcatatacattgtatatctagtaggcaaaaacaaagtttaatagctcaatt 6307600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 12597279 - 12597330
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  12597279 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 12597330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 13533982 - 13533931
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| |||||| |||| ||||    
T  13533982 ccgtgctgccgcacgggtcatatacattgtagatgtagtagataaaaacaaa 13533931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 19997880 - 19997829
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  19997880 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 19997829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 33646157 - 33646106
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  33646157 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 33646106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 376 - 426
Target Start/End: Complemental strand, 2005642 - 2005592
Alignment:
Q  376 cgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||| |||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  2005642 cgtgcggccgcacgggtcatatacattgtagatgcagtagacaaaaacaaa 2005592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 15044937 - 15044891
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaa 421  Q
    |||||||||||||| |||||||||||| ||| ||| |||||||||||    
T  15044937 ccgtgctgccgcacaggtcatatacattgtagatgtagtagacaaaa 15044891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 425
Target Start/End: Original strand, 33289084 - 33289134
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaa 425  Q
    |||||||||||||||||||||||| || |||| ||  ||||||||||||||    
T  33289084 ccgtgctgccgcacgggtcatatagattgtaagtgtggtagacaaaagcaa 33289134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 375 - 435
Target Start/End: Original strand, 162683 - 162743
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaattgaatag 435  Q
    |||||||||||||||||||||||||||   ||||| |||||   ||||||||||| |||||    
T  162683 ccgtgctgccgcacgggtcatatacattcaaaatgtagtaggtcaaagcaaaattcaatag 162743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 2e-20; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 460 - 579
Target Start/End: Original strand, 46918005 - 46918127
Alignment:
Q  460 tgtcatcattttgagcacaaatataatcaaagtttttcatgcctacaatttacgaaatannnnnnnaaacac---attcgaagtactatcaatgcaaata 556  Q
    |||||| |||||||| | ||||||||||||||||| ||||| |||||| ||||||||||       ||||||   |||| |||||||||||||||||| |    
T  46918005 tgtcataattttgagtataaatataatcaaagtttctcatgtctacaaattacgaaatatttatttaaacactacattcaaagtactatcaatgcaaaga 46918104  T
Q  557 ccatcttcgtctattagcaaaat 579  Q
    |||||||| ||||||||||||||    
T  46918105 ccatcttcatctattagcaaaat 46918127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 530 - 629
Target Start/End: Original strand, 46921593 - 46921692
Alignment:
Q  530 acattcgaagtactatcaatgcaaataccatcttcgtctattagcaaaattttcagaccattctttgaagtcacttctgatattgctacataaagttgac 629  Q
    ||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||||  |||| |  ||   |||||||||||||||||||||||    
T  46921593 acattcgaagtactatcaatgcaaacaccatcttcatctaatagcaaaattttcaaaccatttcttgaggcaacccttgatattgctacataaagttgac 46921692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 37099759 - 37099705
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaatt 429  Q
    ||||||||||||||||||||||||||| |||| || |||||||||||| ||||||    
T  37099759 ccgtgctgccgcacgggtcatatacattgtaagtgtagtagacaaaagtaaaatt 37099705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 4584448 - 4584499
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  4584448 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 4584499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 6460182 - 6460233
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  6460182 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 6460233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 531 - 582
Target Start/End: Original strand, 21746516 - 21746567
Alignment:
Q  531 cattcgaagtactatcaatgcaaataccatcttcgtctattagcaaaatttt 582  Q
    ||||||||||| |||||||||||| ||||||||| ||||||||||| |||||    
T  21746516 cattcgaagtattatcaatgcaaacaccatcttcatctattagcaagatttt 21746567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 26949013 - 26948962
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  26949013 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 26948962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 36076468 - 36076519
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  36076468 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 36076519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 1941734 - 1941785
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  1941734 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 1941785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 3898637 - 3898586
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  3898637 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 3898586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 12264415 - 12264364
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  12264415 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 12264364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 31488626 - 31488575
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    |||||||||||||||||| |||||||| ||| ||| ||||||||||| ||||    
T  31488626 ccgtgctgccgcacgggttatatacattgtagatgtagtagacaaaaacaaa 31488575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 34121570 - 34121519
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  34121570 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34121519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 38653941 - 38653992
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  38653941 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38653992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 43363625 - 43363676
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  43363625 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 43363676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 49672777 - 49672726
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  49672777 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 49672726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 55041597 - 55041648
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||| ||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  55041597 ccgtgctaccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 55041648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 378 - 442
Target Start/End: Original strand, 13364039 - 13364103
Alignment:
Q  378 tgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaattgaatagcacaatt 442  Q
    |||||||||||||||||||||||| ||| ||| |||||   |||||||| || |||||| |||||    
T  13364039 tgctgccgcacgggtcatatacattgtatatgtagtagtacaaagcaaagtttaatagctcaatt 13364103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 39146649 - 39146609
Alignment:
Q  381 tgccgcacgggtcatatacatcgtaaatgaagtagacaaaa 421  Q
    ||||||||||||||||||||| ||| ||| |||||||||||    
T  39146649 tgccgcacgggtcatatacattgtagatgtagtagacaaaa 39146609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 548 - 629
Target Start/End: Complemental strand, 35615356 - 35615276
Alignment:
Q  548 atgcaaataccatcttcgtctattagcaaaattttcagaccattctttgaagtcacttctgatattgctacataaagttgac 629  Q
    ||||||| ||||||||| ||||||||||||||||  ||||||||| ||||||| || ||| |||||||||||||||||||||    
T  35615356 atgcaaagaccatcttcatctattagcaaaatttctagaccattccttgaagtaac-tcttatattgctacataaagttgac 35615276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 533 - 591
Target Start/End: Original strand, 24467536 - 24467594
Alignment:
Q  533 ttcgaagtactatcaatgcaaataccatcttcgtctattagcaaaattttcagaccatt 591  Q
    ||||||||||| ||||| |||| ||||||||| ||||||||||||||||||||||||||    
T  24467536 ttcgaagtactctcaatacaaagaccatcttcatctattagcaaaattttcagaccatt 24467594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 429
Target Start/End: Original strand, 405368 - 405422
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaatt 429  Q
    ||||||||||||||||||||||||||| |||| |  |||||||||||||||||||    
T  405368 ccgtgctgccgcacgggtcatatacattgtaagtatagtagacaaaagcaaaatt 405422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 39997906 - 39997855
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  39997906 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 39997855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 17695648 - 17695594
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaatt 429  Q
    |||||||||||||||||| |||||||| |||| || |||||| ||||||||||||    
T  17695648 ccgtgctgccgcacgggtaatatacattgtaagtgtagtagataaaagcaaaatt 17695594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 429
Target Start/End: Original strand, 44831148 - 44831202
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaatt 429  Q
    |||||||||||| |||||||||||||| |||| || |||||| ||||||||||||    
T  44831148 ccgtgctgccgctcgggtcatatacattgtaagtgtagtagataaaagcaaaatt 44831202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 375 - 419
Target Start/End: Original strand, 23353636 - 23353680
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaa 419  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||||    
T  23353636 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaa 23353680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 995829 - 995880
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  995829 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 995880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 6299034 - 6299085
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  6299034 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 6299085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 10478152 - 10478101
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  10478152 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 10478101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 11142682 - 11142631
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    |||||||||||||||| |||||||||| ||| ||| ||||||||||| ||||    
T  11142682 ccgtgctgccgcacggatcatatacattgtagatgtagtagacaaaaacaaa 11142631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 11725405 - 11725354
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||| ||||||||||||||||| ||| ||| ||||||||||| ||||    
T  11725405 ccgtgctgctgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 11725354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 15961347 - 15961296
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  15961347 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 15961296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 18175596 - 18175545
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  18175596 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 18175545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 18997915 - 18997864
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  18997915 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 18997864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 28583070 - 28583019
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| |||||| |||| ||||    
T  28583070 ccgtgctgccgcacgggtcatatacattgtagatgtagtagataaaaacaaa 28583019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 30473898 - 30473949
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  30473898 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 30473949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 32110875 - 32110926
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  32110875 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 32110926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 18842119 - 18842073
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaa 421  Q
    |||| |||||||||||||||||||||| ||| ||| |||||||||||    
T  18842119 ccgttctgccgcacgggtcatatacattgtagatgtagtagacaaaa 18842073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 44837124 - 44837078
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaa 421  Q
    |||||||||||||||||| |||||||| ||| ||| |||||||||||    
T  44837124 ccgtgctgccgcacgggttatatacattgtagatgtagtagacaaaa 44837078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 378 - 426
Target Start/End: Original strand, 35122339 - 35122387
Alignment:
Q  378 tgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||| |||||||||||||||||| ||| ||| ||||||||||| ||||    
T  35122339 tgctgtcgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 35122387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0896 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0896
Description:

Target: scaffold0896; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 1132 - 1078
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaatt 429  Q
    ||||||||||||||||||||||||||| |||| || |||||||||||||||||||    
T  1132 ccgtgctgccgcacgggtcatatacattgtaagtgtagtagacaaaagcaaaatt 1078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 31097927 - 31097877
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaa 425  Q
    ||||||||||||||||||||||||||| |||| || |||||||||||||||    
T  31097927 ccgtgctgccgcacgggtcatatacattgtaagtgtagtagacaaaagcaa 31097877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 32661084 - 32661030
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaatt 429  Q
    ||||||||||||||| ||||||||||| |||| || |||||||||||||||||||    
T  32661084 ccgtgctgccgcacgagtcatatacattgtaagtgtagtagacaaaagcaaaatt 32661030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 530 - 591
Target Start/End: Original strand, 21314327 - 21314388
Alignment:
Q  530 acattcgaagtactatcaatgcaaataccatcttcgtctattagcaaaattttcagaccatt 591  Q
    |||||||||| |||||||||||||| ||||||||  |||||||||||| |||| ||||||||    
T  21314327 acattcgaagaactatcaatgcaaacaccatctttatctattagcaaagtttttagaccatt 21314388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 530 - 591
Target Start/End: Original strand, 40674345 - 40674406
Alignment:
Q  530 acattcgaagtactatcaatgcaaataccatcttcgtctattagcaaaattttcagaccatt 591  Q
    |||||||||| || ||||||||||| ||||||||  |||||||||||| |||||||||||||    
T  40674345 acattcgaagaaccatcaatgcaaacaccatctttatctattagcaaagttttcagaccatt 40674406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 383 - 439
Target Start/End: Complemental strand, 21681116 - 21681060
Alignment:
Q  383 ccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaattgaatagcaca 439  Q
    ||||||||||||||||||||||||||| |||||||||||  ||||||  ||||||||    
T  21681116 ccgcacgggtcatatacatcgtaaatgtagtagacaaaaataaaattatatagcaca 21681060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 13786385 - 13786334
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  13786385 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 13786334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 16376559 - 16376610
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  16376559 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 16376610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 24924294 - 24924243
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  24924294 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 24924243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 21670196 - 21670145
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    |||||||||||||| |||||||||||| ||| ||| ||||||||||| ||||    
T  21670196 ccgtgctgccgcacaggtcatatacattgtagatgtagtagacaaaaacaaa 21670145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 21804586 - 21804637
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  21804586 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 21804637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 27903431 - 27903482
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    |||||||||||||||||||||||| || ||| ||| ||||||||||| ||||    
T  27903431 ccgtgctgccgcacgggtcatatatattgtagatgtagtagacaaaaacaaa 27903482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 33916961 - 33917012
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  33916961 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 33917012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 38163353 - 38163404
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  38163353 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38163404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 418
Target Start/End: Complemental strand, 40969106 - 40969063
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagaca 418  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||    
T  40969106 ccgtgctgccgcacgggtcatatacattgtagatgtagtagaca 40969063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 42242168 - 42242219
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  42242168 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 42242219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 429
Target Start/End: Complemental strand, 21713688 - 21713635
Alignment:
Q  376 cgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaatt 429  Q
    |||||| ||||| |||||||||||| |||| ||| |||||| ||||||||||||    
T  21713688 cgtgctaccgcatgggtcatatacaccgtagatgtagtagataaaagcaaaatt 21713635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 425
Target Start/End: Complemental strand, 31572496 - 31572446
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaa 425  Q
    ||||||||||||||||||||||||||| |||| || |||||||||||||||    
T  31572496 ccgtgctgccgcacgggtcatatacattgtaagtgtagtagacaaaagcaa 31572446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 530 - 627
Target Start/End: Original strand, 42947191 - 42947288
Alignment:
Q  530 acattcgaagtactatcaatgcaaataccatcttcgtctattagcaaaattttcagaccattctttgaagtcacttctgatattgctacataaagttg 627  Q
    ||||| || ||| ||| |||||| || || ||||| |||| ||||||||||||||| |||| | ||||||| |||  |||||||||||||||||||||    
T  42947191 acattagacgtagtataaatgcacatgccgtcttcatctagtagcaaaattttcaggccatcccttgaagtaactattgatattgctacataaagttg 42947288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 8700476 - 8700425
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  8700476 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 8700425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 19596377 - 19596428
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||    
T  19596377 ccgtgctgccgcacgggtcatatacattgtagatgtagtagacaaaaacaaa 19596428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 6120767 - 6120716
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  6120767 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 6120716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 18351766 - 18351715
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  18351766 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 18351715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 27944810 - 27944861
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  27944810 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 27944861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 31424224 - 31424173
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||| ||||||||||| ||| ||| ||||||||||| ||||    
T  31424224 ccgtgctgccgcacgagtcatatacattgtagatgtagtagacaaaaacaaa 31424173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 41664725 - 41664674
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  41664725 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 41664674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 44902296 - 44902245
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  44902296 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 44902245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 386 - 426
Target Start/End: Original strand, 692227 - 692267
Alignment:
Q  386 cacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    |||||||||||||||| ||||||| ||||||||||| ||||    
T  692227 cacgggtcatatacattgtaaatgtagtagacaaaaacaaa 692267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 375 - 429
Target Start/End: Original strand, 28947468 - 28947522
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaatt 429  Q
    |||||||||||||||||||||||||||  ||| || |||||||||||||||||||    
T  28947468 ccgtgctgccgcacgggtcatatacattataagtgtagtagacaaaagcaaaatt 28947522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 530 - 627
Target Start/End: Original strand, 21219837 - 21219934
Alignment:
Q  530 acattcgaagtactatcaatgcaaataccatcttcgtctattagcaaaattttcagaccattctttgaagtcacttctgatattgctacataaagttg 627  Q
    ||||| || ||| ||| |||||| || || ||||| |||| ||||||||||||||| |||| | ||||||| |||  |||||||||||||||||||||    
T  21219837 acattagaggtagtataaatgcacatgccgtcttcatctagtagcaaaattttcaggccatcccttgaagtaactattgatattgctacataaagttg 21219934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 352 - 421
Target Start/End: Complemental strand, 14009915 - 14009850
Alignment:
Q  352 aactagactttccacccgtgcggccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaa 421  Q
    ||||||||||| ||||||||||    ||||||||||||||||||||| || ||||||| |||||||||||    
T  14009915 aactagacttttcacccgtgcg----tgctgccgcacgggtcatataaattgtaaatgtagtagacaaaa 14009850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 530 - 582
Target Start/End: Original strand, 35240018 - 35240070
Alignment:
Q  530 acattcgaagtactatcaatgcaaataccatcttcgtctattagcaaaatttt 582  Q
    ||||||||||||||||||||||||| ||  ||||| |||||||||||||||||    
T  35240018 acattcgaagtactatcaatgcaaacactgtcttcatctattagcaaaatttt 35240070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 1232011 - 1231960
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||||||  ||||||||||| ||||    
T  1232011 ccgtgctgccgcacgggtcatatacattgtaaatatagtagacaaaaacaaa 1231960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 35614282 - 35614231
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||||||| ||||    
T  35614282 ccgtgctaccgcacgggtcatatacattgtaaatgtagtagacaaaaacaaa 35614231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 429
Target Start/End: Original strand, 29387901 - 29387955
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaatt 429  Q
    |||| |||||||||||||||||||||| |||| || ||||||||||| |||||||    
T  29387901 ccgtactgccgcacgggtcatatacattgtaagtgtagtagacaaaaacaaaatt 29387955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 18855247 - 18855292
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaa 420  Q
    ||||||||||||||||||||||||||| ||| ||| ||||||||||    
T  18855247 ccgtgctgccgcacgggtcatatacattgtagatgcagtagacaaa 18855292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 4266596 - 4266545
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  4266596 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 4266545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 18706523 - 18706574
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||| ||||||||||| ||| ||| ||||||||||| ||||    
T  18706523 ccgtgctgccgcacgagtcatatacattgtagatgtagtagacaaaaacaaa 18706574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 29942233 - 29942182
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  29942233 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 29942182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 31018214 - 31018265
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  31018214 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 31018265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 34888700 - 34888751
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  34888700 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 34888751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Original strand, 38913761 - 38913812
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  38913761 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 38913812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 50326216 - 50326165
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  50326216 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 50326165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 429
Target Start/End: Complemental strand, 52957091 - 52957037
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaaatt 429  Q
    ||||||||||||||||||||||||||| ||| ||| | ||| | |||||||||||    
T  52957091 ccgtgctgccgcacgggtcatatacattgtagatgtattaggccaaagcaaaatt 52957037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 408
Target Start/End: Original strand, 2951380 - 2951413
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaat 408  Q
    ||||||||||||||||||||||||||| ||||||    
T  2951380 ccgtgctgccgcacgggtcatatacattgtaaat 2951413  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 420
Target Start/End: Original strand, 23482721 - 23482766
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaa 420  Q
    ||||||||||||||| ||||||||||| ||| ||| ||||||||||    
T  23482721 ccgtgctgccgcacgagtcatatacattgtagatgtagtagacaaa 23482766  T

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Target: scaffold0031 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 375 - 426
Target Start/End: Complemental strand, 46489 - 46438
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaagcaaa 426  Q
    ||||||||||||||||||||||||||| ||| ||  ||||||||||| ||||    
T  46489 ccgtgctgccgcacgggtcatatacattgtagatatagtagacaaaaacaaa 46438  T

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Target: scaffold0515 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0515
Description:

Target: scaffold0515; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 6075 - 6121
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaa 421  Q
    ||||||||||||||||||||||||||| ||| |||  ||||||||||    
T  6075 ccgtgctgccgcacgggtcatatacattgtagatgttgtagacaaaa 6121  T

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Target: scaffold0306 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 6085 - 6131
Alignment:
Q  375 ccgtgctgccgcacgggtcatatacatcgtaaatgaagtagacaaaa 421  Q
    ||||||||||||||||||||||||||| ||| |||  ||||||||||    
T  6085 ccgtgctgccgcacgggtcatatacattgtagatgttgtagacaaaa 6131  T

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