View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11625_high_52 (Length: 244)

Name: NF11625_high_52
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11625_high_52
NF11625_high_52
[»] chr1 (9 HSPs)
chr1 (23-205)||(40816348-40816529)
chr1 (25-205)||(47255902-47256073)
chr1 (22-128)||(47703446-47703552)
chr1 (22-105)||(28266017-28266100)
chr1 (24-86)||(19073390-19073446)
chr1 (24-86)||(19121280-19121336)
chr1 (31-105)||(776912-776985)
chr1 (76-128)||(45644782-45644834)
chr1 (22-93)||(50169630-50169702)
[»] chr7 (6 HSPs)
chr7 (22-184)||(24526268-24526431)
chr7 (22-203)||(22269392-22269572)
chr7 (22-105)||(29160265-29160347)
chr7 (22-86)||(12098247-12098311)
chr7 (28-105)||(41317876-41317953)
chr7 (22-93)||(8153009-8153080)
[»] chr3 (11 HSPs)
chr3 (22-205)||(25796162-25796366)
chr3 (22-128)||(3715501-3715607)
chr3 (22-128)||(29196838-29196944)
chr3 (22-128)||(47650050-47650156)
chr3 (22-105)||(28074056-28074139)
chr3 (22-105)||(9666897-9666980)
chr3 (22-105)||(44700921-44701004)
chr3 (42-128)||(31314191-31314277)
chr3 (112-184)||(9666839-9666911)
chr3 (76-105)||(47650031-47650060)
chr3 (76-104)||(3715597-3715625)
[»] chr2 (12 HSPs)
chr2 (22-128)||(34681842-34681948)
chr2 (22-128)||(31056526-31056633)
chr2 (22-128)||(42269852-42269959)
chr2 (22-105)||(33162858-33162941)
chr2 (22-105)||(36773205-36773288)
chr2 (133-205)||(42269754-42269826)
chr2 (27-128)||(11066953-11067054)
chr2 (136-205)||(8040450-8040519)
chr2 (133-203)||(31056430-31056500)
chr2 (23-86)||(6264548-6264612)
chr2 (25-86)||(6259239-6259301)
chr2 (136-205)||(34681976-34682045)
[»] chr6 (4 HSPs)
chr6 (22-205)||(3039265-3039448)
chr6 (22-104)||(21800930-21801012)
chr6 (23-86)||(8995306-8995370)
chr6 (23-86)||(9019753-9019817)
[»] chr5 (7 HSPs)
chr5 (22-105)||(10282214-10282298)
chr5 (22-128)||(3881213-3881320)
chr5 (22-105)||(28277752-28277834)
chr5 (112-205)||(10282135-10282228)
chr5 (136-205)||(28277844-28277913)
chr5 (24-86)||(659765-659827)
chr5 (77-105)||(3881194-3881222)
[»] chr8 (12 HSPs)
chr8 (22-203)||(5688906-5689086)
chr8 (22-128)||(6127705-6127812)
chr8 (22-105)||(9765405-9765487)
chr8 (22-105)||(40320741-40320824)
chr8 (22-105)||(18141476-18141559)
chr8 (22-128)||(26402737-26402844)
chr8 (91-205)||(6127607-6127721)
chr8 (112-205)||(18141545-18141638)
chr8 (112-205)||(26402849-26402941)
chr8 (133-205)||(9765494-9765566)
chr8 (22-105)||(8149942-8150025)
chr8 (76-185)||(30291281-30291390)
[»] chr4 (11 HSPs)
chr4 (22-205)||(3793610-3793793)
chr4 (22-128)||(24334533-24334639)
chr4 (36-105)||(46147785-46147854)
chr4 (22-105)||(45687625-45687708)
chr4 (112-205)||(46147706-46147799)
chr4 (22-105)||(36463831-36463914)
chr4 (133-205)||(52467705-52467777)
chr4 (22-86)||(52467782-52467846)
chr4 (97-175)||(36463782-36463860)
chr4 (76-105)||(24334514-24334543)
chr4 (23-86)||(36921919-36921983)
[»] scaffold0477 (2 HSPs)
scaffold0477 (22-128)||(5464-5572)
scaffold0477 (76-205)||(5541-5670)
[»] scaffold0148 (2 HSPs)
scaffold0148 (22-128)||(11211-11317)
scaffold0148 (76-205)||(11115-11242)


Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 23 - 205
Target Start/End: Original strand, 40816348 - 40816529
Alignment:
Q  23 gggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtgg 122  Q
    ||||||| ||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| || | ||||||| ||     
T  40816348 gggcaacatggtacgattggatggttcaggtttgg-tttgtcattggaaaaatcgtggcacgatccaggaggaacgtggcacgatgcaggaggaacatga 40816446  T
Q  123 cacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatgct 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||    
T  40816447 cacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtggcacgatgggcacgtaacgtggcacgatgct 40816529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 25 - 205
Target Start/End: Complemental strand, 47256073 - 47255902
Alignment:
Q  25 gcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtggca 124  Q
    |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||  |||||||| |  | |||||||||| ||    
T  47256073 gcaacgtggcacgattggatggttcaggtttgagtt-gtcactggaaaaatcgtggcacgatctaggaggagtgtggcacgattcaggaggaacgtgaca 47255975  T
Q  125 cgattctaacagataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatgct 205  Q
    ||||||  || |||||||| |||||        |||||||||||||||||| ||||||||| || |||||| |||||||||    
T  47255974 cgattcagacggataaggtgtagta--------tcacctgctccaacgtggcacgatgggctcgaaacgtggcacgatgct 47255902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 47703446 - 47703552
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtg 121  Q
    |||||||||||||||||||||||||||||  |||||||||||| |||||||| |||| ||||||||||| |||||||||||||| ||||||| ||| |||    
T  47703446 agggcaacgtggcacgattggatggttcaaatttgggtttgtcgctggaaaattcgtagcacgatccagaaggaacgtggcacgatggaagatgaatgtg 47703545  T
Q  122 gcacgat 128  Q
     ||||||    
T  47703546 tcacgat 47703552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 28266100 - 28266017
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    |||||||||||||||||||| ||||||||| ||| || ||| |||||||||||||||||||||||||| ||||||| |||||||    
T  28266100 agggcaacgtggcacgattgaatggttcagattttgggttgccactggaaaaatcgtggcacgatccaagaggaacatggcacg 28266017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 19073446 - 19073390
Alignment:
Q  24 ggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgat 86  Q
    |||||||||||||||||||||||||      ||||||||||| ||||||||||||||||||||    
T  19073446 ggcaacgtggcacgattggatggtt------tgggtttgtcattggaaaaatcgtggcacgat 19073390  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 19121336 - 19121280
Alignment:
Q  24 ggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgat 86  Q
    |||||||||||||||||||||||||      ||||||||||| ||||||||||||||||||||    
T  19121336 ggcaacgtggcacgattggatggtt------tgggtttgtcattggaaaaatcgtggcacgat 19121280  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 776912 - 776985
Alignment:
Q  31 tggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    ||||||||||| ||||||||| ||| | || | || || |||||||||||||||| |||||||||||||||||||    
T  776912 tggcacgattgaatggttcagtttttgatt-gccattgaaaaaatcgtggcacgacccaggaggaacgtggcacg 776985  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 128
Target Start/End: Complemental strand, 45644834 - 45644782
Alignment:
Q  76 cgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtggcacgat 128  Q
    ||||||||||||||||||||||||||| || || | ||| |||||||||||||    
T  45644834 cgtggcacgatccaggaggaacgtggctcgatgcaggagaaacgtggcacgat 45644782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 50169702 - 50169630
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttg-ggtttgtcactggaaaaatcgtggcacgatccaggag 93  Q
    ||||||||||| |||||||| ||||||||| |||  || ||| ||||| ||||||||||||||||| ||||||    
T  50169702 agggcaacgtgacacgattgaatggttcagttttttgggttgccactgtaaaaatcgtggcacgatgcaggag 50169630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 22 - 184
Target Start/End: Complemental strand, 24526431 - 24526268
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggttt-gggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgt 120  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||    
T  24526431 agggcaacgtggcacgattggatggttcaggttttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcatgatggaagaggaacgt 24526332  T
Q  121 ggcacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtggtacgatggg 184  Q
    ||||||||     | ||||||||||||||||||||| |||||||||||| ||||| | ||||||    
T  24526331 ggcacgatgtagtcggataaggtatagtactgtactatcacctgctccatcgtggcatgatggg 24526268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 22269392 - 22269572
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtg 121  Q
    ||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||| | || |||| |  | ||||||||||    
T  22269392 agggcaacgtggcacgatttgatggttcaagtttgggtt-gtcactggaaaaatcgtggcacgatccaggaggagcatgacacgattcaggaggaacgtg 22269490  T
Q  122 gcacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatg 203  Q
    |||| ||||  || |||||||| ||||| |||||| |||||||||||||||||| ||||||||  || |||||| |||||||    
T  22269491 gcacaattcagacggataaggtgtagtattgtactatcacctgctccaacgtggcacgatgggttcgaaacgtggcacgatg 22269572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 29160347 - 29160265
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||  |||||||||||||||||||||||||||    
T  29160347 agggcaacgtggcacgattggttggttcaggtttggctttgtcact-gaaaaatcaaggcacgatccaggaggaacgtggcacg 29160265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 12098311 - 12098247
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgat 86  Q
    ||||||||||| |||||||| ||||||||| ||| || ||| |||||||||||||||||||||||    
T  12098311 agggcaacgtgacacgattgaatggttcagtttttggattgccactggaaaaatcgtggcacgat 12098247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 105
Target Start/End: Complemental strand, 41317953 - 41317876
Alignment:
Q  28 acgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    |||||||||||||| || |||||| ||| || ||| |||| |||||||||||||||||| ||||||  ||||||||||    
T  41317953 acgtggcacgattgaattgttcagtttttgggttgccactcgaaaaatcgtggcacgatgcaggagatacgtggcacg 41317876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 8153009 - 8153080
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggag 93  Q
    |||||||| ||||| ||||| ||||||||  ||| || ||| |||||||||||| |||||||||| ||||||    
T  8153009 agggcaacatggcaggattgaatggttcaatttttgggttgacactggaaaaattgtggcacgatgcaggag 8153080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 25796366 - 25796162
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaaga-------- 113  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||            
T  25796366 agggcaacgtggcacgattggatgattcaggttttggtttgtcactggaaaaatcgtgacacgatccaggaggaacgtggcacgatggaagaggaatgtg 25796267  T
Q  114 -------------ggaacgtggcacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacg 200  Q
                 ||||||||||| |||||||||  |||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||| ||||    
T  25796266 gcacgatgtaggaggaacgtggcaagattctaacgaataaggtatagtactgtacattcacctgctccaacgtggtacggtgggcacgtaacgtggcacg 25796167  T
Q  201 atgct 205  Q
    |||||    
T  25796166 atgct 25796162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 3715501 - 3715607
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtg 121  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| |||||||||| |||||||||||||||||||||||| || | ||||||| |||||||    
T  3715501 agggcaacgtggcacgattggttggttcagatttgtgtttgtcgctggaaaaattgtggcacgatccaggaggaacgtgacatgatggaagatgaacgtg 3715600  T
Q  122 gcacgat 128  Q
    |||||||    
T  3715601 gcacgat 3715607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 29196944 - 29196838
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtg 121  Q
    |||||||||||||||||||| ||||||||  ||| || ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||    
T  29196944 agggcaacgtggcacgattgaatggttcaatttttgggttgccactggaaaaatcgtggcacgatccaggaggaacgtggcacgatggaagatgaatgtg 29196845  T
Q  122 gcacgat 128  Q
    |||||||    
T  29196844 gcacgat 29196838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 47650156 - 47650050
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtg 121  Q
    ||||||||||||||||||||| |||||||| ||||||||||||  |||||||||  |||||||||||||||||||||||||||  ||||||| |||||||    
T  47650156 agggcaacgtggcacgattggttggttcagatttgggtttgtcgttggaaaaattatggcacgatccaggaggaacgtggcacaatggaagatgaacgtg 47650057  T
Q  122 gcacgat 128  Q
    |||||||    
T  47650056 gcacgat 47650050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 28074056 - 28074139
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    |||||||||||||||||||| ||||||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||||||    
T  28074056 agggcaacgtggcacgattgaatggttcagtttttgggttgccactggaaaaatcgtggcacgatccaggaggaacgtggcacg 28074139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 9666980 - 9666897
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    |||||||||||||||||||| | ||||||| ||| || ||| ||||||||||||||||||||||||||||||||||||||||||    
T  9666980 agggcaacgtggcacgattgaagggttcagtttttgggttgccactggaaaaatcgtggcacgatccaggaggaacgtggcacg 9666897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 44701004 - 44700921
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    |||||||||||||||||||| ||||||||| ||| || ||  |||||||||||||||||||||||||||||||||||| |||||    
T  44701004 agggcaacgtggcacgattgaatggttcagtttttgggttaccactggaaaaatcgtggcacgatccaggaggaacgtagcacg 44700921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 31314191 - 31314277
Alignment:
Q  42 gatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtggcacgat 128  Q
    |||||||||| ||| || | | |||||||||||||||||||||||||| ||||||||||||||| || | |||||||||||||||||    
T  31314191 gatggttcagtttttgggtcgccactggaaaaatcgtggcacgatccaagaggaacgtggcacgatgcaggaggaacgtggcacgat 31314277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 112 - 184
Target Start/End: Complemental strand, 9666911 - 9666839
Alignment:
Q  112 gaggaacgtggcacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtggtacgatggg 184  Q
    ||||||||||||||||| |  || ||||||||||| || |||||| |||||||||||| ||||| ||||||||    
T  9666911 gaggaacgtggcacgatgcagacggataaggtataatattgtactatcacctgctccatcgtggcacgatggg 9666839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 105
Target Start/End: Complemental strand, 47650060 - 47650031
Alignment:
Q  76 cgtggcacgatccaggaggaacgtggcacg 105  Q
    ||||||||||||||||||||||||||||||    
T  47650060 cgtggcacgatccaggaggaacgtggcacg 47650031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 104
Target Start/End: Original strand, 3715597 - 3715625
Alignment:
Q  76 cgtggcacgatccaggaggaacgtggcac 104  Q
    |||||||||||||||||||||||||||||    
T  3715597 cgtggcacgatccaggaggaacgtggcac 3715625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 3e-44; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 34681842 - 34681948
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtg 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||    
T  34681842 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccagtaggaacgtggcacgatggaagatgaacgtg 34681941  T
Q  122 gcacgat 128  Q
     ||||||    
T  34681942 acacgat 34681948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 31056633 - 31056526
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggttt-gggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgt 120  Q
    ||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||||||    
T  31056633 agggcaacgtggcacaattggatggttcagattttgggtttgtcactggaaaaatcatggcacgatccagaaggaacatggcacgatggaagaggaacgt 31056534  T
Q  121 ggcacgat 128  Q
    ||||||||    
T  31056533 ggcacgat 31056526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 42269959 - 42269852
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgg-gtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgt 120  Q
    |||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||||||||| | ||||||||||||||    
T  42269959 agggcaacgtggcacgattggatggttcaggttttgcgtttgtcgctggaaaaatcgtggcaggatccaggaggaacgtggcatgatggaagaggaacgt 42269860  T
Q  121 ggcacgat 128  Q
    | ||||||    
T  42269859 gacacgat 42269852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 33162941 - 33162858
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    |||| ||||||||||||||| ||||||||| ||| || ||| |||||||||||||||||||||||||||||||||| |||||||    
T  33162941 agggaaacgtggcacgattgaatggttcagtttttgggttgccactggaaaaatcgtggcacgatccaggaggaacatggcacg 33162858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 36773205 - 36773288
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    |||||||||||||||||||| ||||||||| ||| || ||| |||||||||||| |||||||||||||||||||||||| ||||    
T  36773205 agggcaacgtggcacgattgaatggttcagtttttgggttgccactggaaaaattgtggcacgatccaggaggaacgtgacacg 36773288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 42269826 - 42269754
Alignment:
Q  133 acagataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatgct 205  Q
    ||||||||||||||||| |||||| |||||||||||| ||||| |||||||||||| |||||| |||||||||    
T  42269826 acagataaggtatagtattgtactatcacctgctccatcgtggcacgatgggcacgaaacgtggcacgatgct 42269754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 27 - 128
Target Start/End: Original strand, 11066953 - 11067054
Alignment:
Q  27 aacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtggcacg 126  Q
    ||||||||||||||| | ||||||| ||| || ||| ||||| |||||||||||||||||| ||||||||||||  ||| || | |||||||||| ||||    
T  11066953 aacgtggcacgattgaagggttcagtttttgggttgccactgaaaaaatcgtggcacgatctaggaggaacgtgatacgatgcaggaggaacgtgacacg 11067052  T
Q  127 at 128  Q
    ||    
T  11067053 at 11067054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 8040519 - 8040450
Alignment:
Q  136 gataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatgct 205  Q
    ||||||||||||||||||||| |||||||||||| ||||| ||||||||  || |||||| |||||||||    
T  8040519 gataaggtatagtactgtactatcacctgctccatcgtggcacgatggggtcgaaacgtggcacgatgct 8040450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 31056500 - 31056430
Alignment:
Q  133 acagataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatg 203  Q
    |||||||||||||| || |||||| | |||||||||| ||||| ||||||||  ||||||||| |||||||    
T  31056500 acagataaggtataatattgtactatgacctgctccatcgtggcacgatgggatcgtaacgtggcacgatg 31056430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 6264612 - 6264548
Alignment:
Q  23 gggcaacgtggcacgattggatggttcaggtttg-ggtttgtcactggaaaaatcgtggcacgat 86  Q
    ||||||||||||| ||||||||| ||||| |||| ||   |||||||||||||||||||||||||    
T  6264612 gggcaacgtggcatgattggatgtttcagttttgaggcaagtcactggaaaaatcgtggcacgat 6264548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 86
Target Start/End: Complemental strand, 6259301 - 6259239
Alignment:
Q  25 gcaacgtggcacgattggatggttcaggtttg-ggtttgtcactggaaaaatcgtggcacgat 86  Q
    |||||||||||| |||||||| ||||| |||| ||   |||||||||||||||||||||||||    
T  6259301 gcaacgtggcactattggatgtttcagttttgaggaaagtcactggaaaaatcgtggcacgat 6259239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 34681976 - 34682045
Alignment:
Q  136 gataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatgct 205  Q
    |||||||||||||| |||||| ||||||||| ||  |||| ||||||||  || |||||| |||||||||    
T  34681976 gataaggtatagtattgtactatcacctgcttcattgtggcacgatggggtcgaaacgtggcacgatgct 34682045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 77; Significance: 7e-36; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 22 - 205
Target Start/End: Complemental strand, 3039448 - 3039265
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggttt-gggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgt 120  Q
    |||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||  ||||||||||||||||||||| |||| |||||||||    
T  3039448 agggcaacgtggcacgattggatggttcagattttgggtttgtcgctggaaaaatcgtggcaaaatccaggaggaacgtggcacgatggaggaggaacgt 3039349  T
Q  121 ggcacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatgct 205  Q
    |||||||| | |  |||||||    |||| |||| ||  |||  ||||| ||||| |||||||||||| |||||| |||||||||    
T  3039348 ggcacgatgc-aggagataagagcaagtattgtattgctaccaactccatcgtggcacgatgggcacgaaacgtggcacgatgct 3039265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 21800930 - 21801012
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcac 104  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||    
T  21800930 agggcaacgtggtacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaagaggaacatggcac 21801012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 8995306 - 8995370
Alignment:
Q  23 gggcaacgtggcacgattggatggttcaggttt-gggtttgtcactggaaaaatcgtggcacgat 86  Q
    ||||||||||||||||||||| | ||||| ||| |||   | |||||||||||||||||||||||    
T  8995306 gggcaacgtggcacgattggaggtttcagtttttgggcaaggcactggaaaaatcgtggcacgat 8995370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 9019753 - 9019817
Alignment:
Q  23 gggcaacgtggcacgattggatggttcaggttt-gggtttgtcactggaaaaatcgtggcacgat 86  Q
    ||||||||||||||||||||| | ||||| ||| |||   | |||||||||||||||||||||||    
T  9019753 gggcaacgtggcacgattggaggtttcagtttttgggcaaggcactggaaaaatcgtggcacgat 9019817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 10282298 - 10282214
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggttt-gggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10282298 agggcaacgtggcacgattggatggttcaggttttgggtttgtcgctggaaaaatcgtggcacgatccaggaggaacgtggcacg 10282214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 3881320 - 3881213
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggttt-gggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgt 120  Q
    |||||||||||||||||||||||||||||||||| |||||| ||  ||||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||    
T  3881320 agggcaacgtggcacgattggatggttcaggttttgggtttatcgttggaaaaatcgtggcacgatccaggaggaacgtggtacgatggaagatgaatgt 3881221  T
Q  121 ggcacgat 128  Q
    ||||||||    
T  3881220 ggcacgat 3881213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 28277752 - 28277834
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    ||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| |||||||||||||||||||  ||||||||    
T  28277752 agggcaacgtggcacgattggatggtttaggtttggg-ttgtcattggaaaaattgtggcacgatccaggaggagtgtggcacg 28277834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 10282228 - 10282135
Alignment:
Q  112 gaggaacgtggcacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatgct 205  Q
    ||||||||||||||||| |  || ||||||||||||||||||||| |||||  ||||| | ||| ||||||||||||||||||| |||||||||    
T  10282228 gaggaacgtggcacgatgcagacggataaggtatagtactgtactatcaccaactccatcatggcacgatgggcacgtaacgtggcacgatgct 10282135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 28277844 - 28277913
Alignment:
Q  136 gataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatgct 205  Q
    |||||||| |||||||||| | |||||||||||||||| | ||||||||| || ||||||  ||||||||    
T  28277844 gataaggtgtagtactgtaatatcacctgctccaacgttgcacgatgggctcgaaacgtggaacgatgct 28277913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 659765 - 659827
Alignment:
Q  24 ggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgat 86  Q
    |||||||||||||||||||| | ||||| ||  ||   |||||||||||||||||||||||||    
T  659765 ggcaacgtggcacgattggaggtttcagtttgaggcaagtcactggaaaaatcgtggcacgat 659827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 105
Target Start/End: Complemental strand, 3881222 - 3881194
Alignment:
Q  77 gtggcacgatccaggaggaacgtggcacg 105  Q
    |||||||||||||||||||||||||||||    
T  3881222 gtggcacgatccaggaggaacgtggcacg 3881194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 203
Target Start/End: Original strand, 5688906 - 5689086
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtg 121  Q
    |||||||||||||||||||| ||||||||| |||  | ||||||||| |||||||||||||||||||||||||||||||||||| || | ||| ||||||    
T  5688906 agggcaacgtggcacgattgaatggttcagttttttggttgtcactgaaaaaatcgtggcacgatccaggaggaacgtggcacgatgcaggagcaacgtg 5689005  T
Q  122 gcacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatg 203  Q
    ||||| | | |  ||||||| |  ||||||||||||  |||  ||||| ||||| ||||||||| || |||||| |||||||    
T  5689006 gcacggtgc-aggagataagatcaagtactgtactgctaccaactccatcgtggcacgatgggctcgaaacgtggcacgatg 5689086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 6127812 - 6127705
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggttt-gggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgt 120  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||| || ||||||| |||||||||||||  ||||||||| |||| ||||||||||||||    
T  6127812 agggcaatgtggcacgattggatggttcagattttgggtttgtcgctagaaaaattgtggcacgatccaataggaacgtgacacgatggaagaggaacgt 6127713  T
Q  121 ggcacgat 128  Q
    ||||||||    
T  6127712 ggcacgat 6127705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 9765405 - 9765487
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    |||||||||||||||||||||||||||||  |||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  9765405 agggcaacgtggcacgattggatggttcatatttgggtttgtcac-ggaaaaatcatggcacgatccaggaggaacgtggcacg 9765487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 40320741 - 40320824
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    |||||||||||||||||||| ||||||||| ||| || ||| |||||||||||||||||||| ||  |||||||||||||||||    
T  40320741 agggcaacgtggcacgattgaatggttcagtttttgggttgccactggaaaaatcgtggcacaatgtaggaggaacgtggcacg 40320824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 18141476 - 18141559
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    |||||||||| ||||||||| | ||||||| ||| || ||| ||||||||||||  ||||||||||||||||||||||||||||    
T  18141476 agggcaacgtcgcacgattgaacggttcagtttttgggttgccactggaaaaattatggcacgatccaggaggaacgtggcacg 18141559  T

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Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 26402737 - 26402844
Alignment:
Q  22 agggcaacgtggcacgattggatggttcag-gtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgt 120  Q
    ||||||||||||||||||||||||||||||  ||||||||| |  |||||||| |||||||||||| ||||| ||||||| |||| | ||||  |||||     
T  26402737 agggcaacgtggcacgattggatggttcagattttgggtttatagctggaaaattcgtggcacgattcaggatgaacgtgacacgatagaagctgaacgc 26402836  T
Q  121 ggcacgat 128  Q
    ||||||||    
T  26402837 ggcacgat 26402844  T

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Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 6127721 - 6127607
Alignment:
Q  91 gaggaacgtggcacggtggaagaggaacgtggcacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgta 190  Q
    ||||||||||||||| |  | || ||||||||||||||    || ||||||||||||||||||||| |||||||||||| ||||| ||||| | |||| |    
T  6127721 gaggaacgtggcacgatccaggaagaacgtggcacgatgtggacggataaggtatagtactgtactatcacctgctccatcgtggcacgattgacacgaa 6127622  T
Q  191 acgtgacacgatgct 205  Q
    ||||| |||||||||    
T  6127621 acgtggcacgatgct 6127607  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 18141545 - 18141638
Alignment:
Q  112 gaggaacgtggcacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatgct 205  Q
    ||||||||||||||||| |  || |||||||||||||| |||||| ||| |||| ||| ||||| ||||||||| || |||||| |||||||||    
T  18141545 gaggaacgtggcacgatgcagacggataaggtatagtattgtactatcatctgccccatcgtggcacgatgggctcgaaacgtggcacgatgct 18141638  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 205
Target Start/End: Original strand, 26402849 - 26402941
Alignment:
Q  112 gaggaacgtggcacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatgct 205  Q
    |||||||||||||||||    || ||||||||||||||||||||| | |||||||||| ||||| ||||||| |||| |||||| |||||||||    
T  26402849 gaggaacgtggcacgatgtggacggataaggtatagtactgtactat-acctgctccatcgtggcacgatggacacgaaacgtggcacgatgct 26402941  T

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Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 9765494 - 9765566
Alignment:
Q  133 acagataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatgct 205  Q
    |||||||||||||||||||||||| ||||||||||||  |||| ||||||||  || |||||| |||||||||    
T  9765494 acagataaggtatagtactgtactatcacctgctccattgtggcacgatggggtcgaaacgtggcacgatgct 9765566  T

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Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 8150025 - 8149942
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    ||||||| |||||||||||| ||||||||| ||| || ||| |||| ||||| ||||||||||||| |||||||| ||| ||||    
T  8150025 agggcaatgtggcacgattgaatggttcagtttttgggttgccactagaaaattcgtggcacgatctaggaggaatgtgacacg 8149942  T

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Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 185
Target Start/End: Original strand, 30291281 - 30291390
Alignment:
Q  76 cgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtggcacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtgg 175  Q
    ||||||||||| ||||||||||| | |||| |  | ||| ||| || |||||| |  || ||||||||| |||| |||||| |||||||||||| |||||    
T  30291281 cgtggcacgatgcaggaggaacgcgacacgatccaggagaaacatgacacgatgcagacggataaggtaaagtattgtactatcacctgctccatcgtgg 30291380  T
Q  176 tacgatgggc 185  Q
     || ||||||    
T  30291381 cacaatgggc 30291390  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 205
Target Start/End: Original strand, 3793610 - 3793793
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggt-ttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgt 120  Q
    |||| ||| ||| ||||||||||||||||| | |||||||| || |||||||||||||||||||||||||||||||| ||| ||| ||||||| ||||||    
T  3793610 agggaaacatggtacgattggatggttcagatattgggtttttcgctggaaaaatcgtggcacgatccaggaggaacatggaacgatggaagatgaacgt 3793709  T
Q  121 ggcacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatgct 205  Q
    ||||||||    |  |||||||||||||| |||||| | || ||||||| ||||||||||| ||  || |||||| |||||||||    
T  3793710 ggcacgatgtggatggataaggtatagtattgtactat-acatgctccatcgtggtacgattgggtcgaaacgtggcacgatgct 3793793  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 24334639 - 24334533
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtg 121  Q
    ||||||||||| |||||||||||||||||| ||||| ||||||  ||||||| | |||||||||||||| |||||||||||||| ||||||| |||||||    
T  24334639 agggcaacgtgtcacgattggatggttcagatttggatttgtcgttggaaaatttgtggcacgatccagaaggaacgtggcacgatggaagatgaacgtg 24334540  T
Q  122 gcacgat 128  Q
    |||||||    
T  24334539 gcacgat 24334533  T

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Target: chr4; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 36 - 105
Target Start/End: Complemental strand, 46147854 - 46147785
Alignment:
Q  36 cgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46147854 cgattgaatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 46147785  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 45687708 - 45687625
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    |||||||||||| ||||||| ||||||||| ||| || ||| |||||||||| |||||||||||||||||||||||||| ||||    
T  45687708 agggcaacgtggtacgattgaatggttcagtttttgggttgccactggaaaagtcgtggcacgatccaggaggaacgtgacacg 45687625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 112 - 205
Target Start/End: Complemental strand, 46147799 - 46147706
Alignment:
Q  112 gaggaacgtggcacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatgct 205  Q
    ||||||||||||||||| |  ||  |||||||||||||||||||| |||||||||||||||||| ||||||||| |  |||||| |||||||||    
T  46147799 gaggaacgtggcacgatgcagacgaataaggtatagtactgtactatcacctgctccaacgtggcacgatgggctcaaaacgtggcacgatgct 46147706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 36463914 - 36463831
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacg 105  Q
    ||||||||||| |||||||| ||||||||| ||| || ||| || || ||||||||||||||||| ||||||||||||||||||    
T  36463914 agggcaacgtgacacgattgaatggttcagtttttgggttgccattgaaaaaatcgtggcacgatgcaggaggaacgtggcacg 36463831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 133 - 205
Target Start/End: Complemental strand, 52467777 - 52467705
Alignment:
Q  133 acagataaggtatagtactgtactgtcacctgctccaacgtggtacgatgggcacgtaacgtgacacgatgct 205  Q
    |||||||||||||||||||||||| |||||||||||| ||||| ||||||||| || || ||| |||||||||    
T  52467777 acagataaggtatagtactgtactatcacctgctccatcgtggcacgatgggctcgaaatgtggcacgatgct 52467705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 52467846 - 52467782
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgat 86  Q
    |||||||||||||||||||| ||||||||||||| || ||| || || |||||||| ||||||||    
T  52467846 agggcaacgtggcacgattgaatggttcaggttttgggttgccattgaaaaaatcgaggcacgat 52467782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 175
Target Start/End: Complemental strand, 36463860 - 36463782
Alignment:
Q  97 cgtggcacggtggaagaggaacgtggcacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtgg 175  Q
    ||||||||| || | ||||||||||||||||  |  ||  ||||||||||||| |||||| |||||||||||| |||||    
T  36463860 cgtggcacgatgcaggaggaacgtggcacgaagcagacgaataaggtatagtattgtactatcacctgctccatcgtgg 36463782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 105
Target Start/End: Complemental strand, 24334543 - 24334514
Alignment:
Q  76 cgtggcacgatccaggaggaacgtggcacg 105  Q
    ||||||||||||||||||||||||||||||    
T  24334543 cgtggcacgatccaggaggaacgtggcacg 24334514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 36921983 - 36921919
Alignment:
Q  23 gggcaacgtggcacgattggatggttcaggtttg-ggtttgtcactggaaaaatcgtggcacgat 86  Q
    ||||||| ||||||||||||| | ||||| |||| ||   |||||||||||||||||||||||||    
T  36921983 gggcaacatggcacgattggaggtttcagttttgaggcaagtcactggaaaaatcgtggcacgat 36921919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 128
Target Start/End: Original strand, 5464 - 5572
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggttt-gggtttgtcactggaaaaat-cgtggcacgatccaggaggaacgtggcacggtggaagaggaacg 119  Q
    ||||||||||||||||||| |||||||||| ||| ||||||||| |||||||||| ||||||||||| ||| | |||||||||||| |||||||||||||    
T  5464 agggcaacgtggcacgattagatggttcagattttgggtttgtcgctggaaaaatacgtggcacgatgcagaaagaacgtggcacgatggaagaggaacg 5563  T
Q  120 tggcacgat 128  Q
    |||||||||    
T  5564 tggcacgat 5572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0477; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 205
Target Start/End: Original strand, 5541 - 5670
Alignment:
Q  76 cgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtggcacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtgg 175  Q
    |||||||||||  | ||||||||||||||| |  | |||||| ||| ||| || |  || ||||||||||| || |||||| |||||  ||||| |||||    
T  5541 cgtggcacgatggaagaggaacgtggcacgatccaggaggaatgtgtcacaatgcagacggataaggtatattattgtactatcaccaactccatcgtgg 5640  T
Q  176 tacgatgggcacgtaacgtgacacgatgct 205  Q
     ||||||||||||||||||| |||||||||    
T  5641 cacgatgggcacgtaacgtggcacgatgct 5670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 11317 - 11211
Alignment:
Q  22 agggcaacgtggcacgattggatggttcaggtttgggtttgtcactggaaaaatcgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtg 121  Q
    ||||||||||||||||||| ||||||||||  ||| ||||||  || ||||| | ||||||||||  || |||||||||||||| ||||||| |||||||    
T  11317 agggcaacgtggcacgattagatggttcagaattgagtttgttgctcgaaaatttgtggcacgatttagaaggaacgtggcacgatggaagatgaacgtg 11218  T
Q  122 gcacgat 128  Q
    |||||||    
T  11217 gcacgat 11211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 11242 - 11115
Alignment:
Q  76 cgtggcacgatccaggaggaacgtggcacggtggaagaggaacgtggcacgattctaacagataaggtatagtactgtactgtcacctgctccaacgtgg 175  Q
    |||||||||||  | || |||||||||||| |  ||||| |||||||||||||  || | ||||||||||||||||||||| | |||| ||||| |||||    
T  11242 cgtggcacgatggaagatgaacgtggcacgatccaagagaaacgtggcacgatg-tagcggataaggtatagtactgtactat-acctactccatcgtgg 11145  T
Q  176 tacgatgggcacgtaacgtgacacgatgct 205  Q
     ||||| ||  || |||||| |||||||||    
T  11144 cacgattgggtcgaaacgtggcacgatgct 11115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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