View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11625_low_10 (Length: 545)

Name: NF11625_low_10
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11625_low_10
NF11625_low_10
[»] chr6 (2 HSPs)
chr6 (22-534)||(5919887-5920399)
chr6 (364-510)||(14613262-14613408)
[»] chr5 (1 HSPs)
chr5 (22-539)||(20324194-20324708)
[»] chr1 (2 HSPs)
chr1 (414-539)||(32612606-32612731)
chr1 (264-450)||(52777545-52777731)
[»] chr3 (4 HSPs)
chr3 (264-450)||(19586940-19587126)
chr3 (264-450)||(12285165-12285351)
chr3 (282-384)||(44667847-44667949)
chr3 (409-437)||(4646295-4646323)
[»] scaffold0329 (1 HSPs)
scaffold0329 (264-450)||(10874-11060)
[»] chr4 (3 HSPs)
chr4 (264-450)||(22177171-22177357)
chr4 (356-488)||(18834149-18834281)
chr4 (403-510)||(35087208-35087315)
[»] chr2 (2 HSPs)
chr2 (301-462)||(34891091-34891252)
chr2 (263-383)||(29499310-29499430)
[»] scaffold0257 (1 HSPs)
scaffold0257 (408-510)||(13751-13853)
[»] chr7 (2 HSPs)
chr7 (408-510)||(19653410-19653512)
chr7 (414-467)||(3820156-3820209)


Alignment Details
Target: chr6 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 22 - 534
Target Start/End: Complemental strand, 5920399 - 5919887
Alignment:
Q  22 acttcactgaagatgattggtttggctaatcaagtggctggtctttacatatatactgctgattctcatgttttttcaactagttttatgcattccccca 121  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| || | |||||| ||||| ||||||||||||||||||||    
T  5920399 acttcattgaagatgattggtttggctaatcaagtggctggtctttacaaatatactcctgcttatgatgtttgttcaattagttttatgcattccccca 5920300  T
Q  122 ataaatcttgtaatttttcttcttctatcagttgtaattcaagcaattgtattccagttactgccttatggcacttaaggcttggtcatctctctaatca 221  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  5920299 ataaatcttgtaatttttcttcttctatcagttgtgattcaagcaattgtattccagttactgccttatggcacttaagacttggtaatctctctaatca 5920200  T
Q  222 aagaatgaccaaaatgtctcatttgtatccatctattgttcacaataataaagatgtgtttgatatttgtcacttttctaaacaaaagcatttacctttt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5920199 aagaatgaccaaaatgtctcatttgtatccatctattgttcacaataataaagatgtgtgtgatatttgtcacttttctaaacaaaagcatttacctttt 5920100  T
Q  322 tcttcaagtttatctcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttc 421  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  5920099 tcttcaagtttatctcatgcctctaccaattttgaattgcttcattttgacatatggggtcctatttcaacttcatatgtccatggccatagatattttc 5920000  T
Q  422 tcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttcatgtgaaaaatttcattctcatgatcag 521  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5919999 tcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttccgttcatgtgaaaaatttcattctcatgatcag 5919900  T
Q  522 aactcaatttcat 534  Q
    |||||||||||||    
T  5919899 aactcaatttcat 5919887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 364 - 510
Target Start/End: Original strand, 14613262 - 14613408
Alignment:
Q  364 cattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgatgaccatagcagatttttatggattattc 463  Q
    |||||||| || ||||||||||| || | | | ||||| |||   ||||||||||||||||| || ||||||||  | || |||||| | |||||| |||    
T  14613262 cattttgatatttggggtcctctatccactgcttatgtacataatcatagatattttctcaccattcttgatgattacagtagatttgtttggattgttc 14613361  T
Q  464 ttctaaagtctaaatcagaagtttcccttcatgtgaaaaatttcatt 510  Q
    || |||| || ||||| |||||||| |  ||||| ||||| ||||||    
T  14613362 ttttaaaatcaaaatctgaagtttctcaacatgttaaaaacttcatt 14613408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 22 - 539
Target Start/End: Complemental strand, 20324708 - 20324194
Alignment:
Q  22 acttcactgaagatgattggtttggctaatcaagtggctggtctttacatatatactgctgattctcatgttttttcaactagttttatgcattccccca 121  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||| ||  |||| || ||  ||| |||||| |||||||||| || |    
T  20324708 acttcattgaagatgattggtttggctaagcaagtggctggtctttacagatatactcctccttctgattttagttccactagtcttatgcattctccaa 20324609  T
Q  122 ataaatcttgtaatttttcttcttctatcagttgtaattcaagcaattgtattccagttactgccttatggcacttaaggcttggtcatctctctaatca 221  Q
    |||||||||||||||||||||||   |||||||||||||| | |||||||||||||||| ||||||||||||| || |||||||||||||||||||||||    
T  20324608 ataaatcttgtaatttttcttct---atcagttgtaattccaacaattgtattccagttgctgccttatggcattttaggcttggtcatctctctaatca 20324512  T
Q  222 aagaatgaccaaaatgtctcatttgtatccatctattgttcacaataataaagatgtgtttgatatttgtcacttttctaaacaaaagcatttacctttt 321  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  20324511 aagaatgatcaaaatgtctcatttgtatccatctattgttcacaataatagagatgtgtgtgatatttgtcacttttctaaacaaaaacatttacctttt 20324412  T
Q  322 tcttcaagtttatctcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttc 421  Q
    |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||| |||| ||||||| ||||||||| |||||||||||||    
T  20324411 tcttcaagtttatctcatgcttctactaattttgaattacttcattttgacatatggggtcctatttccatttcatctgtccatggtcatagatattttc 20324312  T
Q  422 tcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttcatgtgaaaaatttcattctcatgatcag 521  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  20324311 tcactatacttgatgatcatagcagatttttatggattattcttctaaaatctaaatcagaagtttctcttcatgtgaaaaacttcattctcatgatcag 20324212  T
Q  522 aactcaatttcatctcac 539  Q
    ||||||||||||| ||||    
T  20324211 aactcaatttcatgtcac 20324194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 9e-22; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 414 - 539
Target Start/End: Complemental strand, 32612731 - 32612606
Alignment:
Q  414 atattttctcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttcatgtgaaaaatttcattctc 513  Q
    |||||||||||| ||| | ||||| |||||||||||| ||||| | |||||| |||| || || |||||||||||  |||||||||||| ||| || |||    
T  32612731 atattttctcaccatattggatgatcatagcagatttctatgggtcattcttttaaaatcaaagtcagaagtttctattcatgtgaaaatttttatcctc 32612632  T
Q  514 atgatcagaactcaatttcatctcac 539  Q
    ||||||| ||||||||||||| ||||    
T  32612631 atgatcaaaactcaatttcatgtcac 32612606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 264 - 450
Target Start/End: Original strand, 52777545 - 52777731
Alignment:
Q  264 caataataaagatgtgtttgatatttgtcacttttctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgctt 363  Q
    ||||||||||||||| | |||| | || || ||| ||||||| || |||||||||||   ||||||| | |||||||| ||||||||||||||||| |||    
T  52777545 caataataaagatgtttgtgatttgtgccattttgctaaacataaacatttacctttcaattcaagtatttctcatgcttctaccaattttgaattactt 52777644  T
Q  364 cattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgatgaccatagcagattt 450  Q
    ||| |||| || ||||||||  | || ||| ||| ||| ||||| || ||||| ||||| |||||  | ||||| ||||||||||||    
T  52777645 catcttgatatttggggtccattatctattgcatctgtacatggtcacagatactttcttactattgtagatgatcatagcagattt 52777731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 264 - 450
Target Start/End: Complemental strand, 19587126 - 19586940
Alignment:
Q  264 caataataaagatgtgtttgatatttgtcacttttctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgctt 363  Q
    ||||||||||||||  | |||| | ||||| ||| ||||||| || |||||||||||   ||||||| | |||||||| ||||||||||||||||| |||    
T  19587126 caataataaagatgcttgtgatttgtgtcattttgctaaacataaacatttacctttcaattcaagtatttctcatgcttctaccaattttgaattactt 19587027  T
Q  364 cattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgatgaccatagcagattt 450  Q
    ||| |||| || ||||||||  | || ||| ||| ||| ||||| || ||||| ||||| |||||  | ||||| ||||||||||||    
T  19587026 catcttgatatttggggtccattatctattgcatctgtacatggtcacagatactttcttactattgtagatgatcatagcagattt 19586940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 264 - 450
Target Start/End: Original strand, 12285165 - 12285351
Alignment:
Q  264 caataataaagatgtgtttgatatttgtcacttttctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgctt 363  Q
    ||||||||||||||  | |||| | || || ||| ||||||| || |||||||||||   ||||||| | |||||||| |||||||||| |||||| |||    
T  12285165 caataataaagatgcttgtgatttgtgccattttgctaaacataaacatttacctttcaattcaagtatttctcatgcttctaccaattatgaattactt 12285264  T
Q  364 cattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgatgaccatagcagattt 450  Q
    ||| |||| || ||||||||  | || ||| ||| ||| ||||| || ||||| ||||| |||||  | ||||| ||||||||||||    
T  12285265 catcttgatatttggggtccattatctattgcatctgtacatggtcacagatactttcttactattgtagatgatcatagcagattt 12285351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 44667949 - 44667847
Alignment:
Q  282 tgatatttgtcacttttctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgcttcattttgacatatggggt 381  Q
    |||||||||||||||| |||||||||| |||||||| |||||  | |||  || |||||| ||  ||| ||||||| | |||||| |||| || ||||||    
T  44667949 tgatatttgtcactttgctaaacaaaaacatttacccttttcaccgagtgaatatcatgcttcatccatttttgaacttcttcatcttgatatttggggt 44667850  T
Q  382 cct 384  Q
    |||    
T  44667849 cct 44667847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 409 - 437
Target Start/End: Complemental strand, 4646323 - 4646295
Alignment:
Q  409 catagatattttctcactatacttgatga 437  Q
    |||||||||||||||||||||||||||||    
T  4646323 catagatattttctcactatacttgatga 4646295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0329 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 450
Target Start/End: Original strand, 10874 - 11060
Alignment:
Q  264 caataataaagatgtgtttgatatttgtcacttttctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgctt 363  Q
    ||||||||||||||| | |||| | || || ||| ||||||| || |||||||||||   ||| ||| | |||||||| ||||||||||||||||| |||    
T  10874 caataataaagatgtttgtgatttgtgccattttgctaaacataaacatttacctttcaattccagtatttctcatgcttctaccaattttgaattactt 10973  T
Q  364 cattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgatgaccatagcagattt 450  Q
    ||| |||| || ||||||||  | || ||| ||| ||| ||||| || ||||| ||||| |||||  | ||||| ||||||||||||    
T  10974 catcttgatatttggggtccattatctattgcatctgtacatggtcacagatactttcttactattgtagatgatcatagcagattt 11060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 264 - 450
Target Start/End: Complemental strand, 22177357 - 22177171
Alignment:
Q  264 caataataaagatgtgtttgatatttgtcacttttctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgctt 363  Q
    ||||||||||||||| | |||| | || || ||| ||||||| || |||||||||||   ||| ||| | |||||||| ||||||||||||||||| |||    
T  22177357 caataataaagatgtttgtgatttgtgccattttgctaaacataaacatttacctttcaattccagtatttctcatgcttctaccaattttgaattactt 22177258  T
Q  364 cattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgatgaccatagcagattt 450  Q
    ||| |||| || ||||||||  | || ||| ||| ||| ||||| || ||||| ||||| |||||  | ||||| ||||||||||||    
T  22177257 catcttgatatttggggtccattatctattgcatctgtacatggtcacagatactttcttactattgtagatgatcatagcagattt 22177171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 356 - 488
Target Start/End: Complemental strand, 18834281 - 18834149
Alignment:
Q  356 aattgcttcattttgacatatggggtcctctttcaatttcatatgtccatggccatagatattttctcactatacttgatgaccatagcagatttttatg 455  Q
    |||||||||||||||||||| |||| || ||| | |||   |  || ||| | |||| ||||||||| |||||  |||||||||||| ||||||||||||    
T  18834281 aattgcttcattttgacatacggggaccccttgccattaattcagtacatagacataaatattttcttactattgttgatgaccataccagatttttatg 18834182  T
Q  456 gattattcttctaaagtctaaatcagaagtttc 488  Q
    ||| |||||| | || ||||| || ||||||||    
T  18834181 gatcattcttttgaaatctaagtctgaagtttc 18834149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 403 - 510
Target Start/End: Original strand, 35087208 - 35087315
Alignment:
Q  403 catggccatagatattttctcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttcatgtgaaaa 502  Q
    ||||| ||||| |||||| | ||||||||||||||||||||||||||  | ||||||||| | || ||| | ||| | ||||| || || ||||| ||||    
T  35087208 catggtcataggtattttttgactatacttgatgaccatagcagattcctttggattattttacttaagaccaaagctgaagtctctctccatgtcaaaa 35087307  T
Q  503 atttcatt 510  Q
    ||||||||    
T  35087308 atttcatt 35087315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 301 - 462
Target Start/End: Complemental strand, 34891252 - 34891091
Alignment:
Q  301 aaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgcttcattttgacatatggggtcctctttcaatttcatatg 400  Q
    |||||||| ||| | |||||| |||| |||||||||||||| ||  |||||||||||||| | ||| |||| ||||| || ||| | ||  |||||| ||    
T  34891252 aaacaaaaacatatcccttttacttccagtttatctcatgcatcatccaattttgaattgttgcatcttgatatatgaggccctttgtctgtttcatctg 34891153  T
Q  401 tccatggccatagatattttctcactatacttgatgaccatagcagatttttatggattatt 462  Q
    | |||||||| |  |||||| | || ||  ||||||| ||||| |||||| |||||||||||    
T  34891152 ttcatggccacaagtattttttaaccattgttgatgatcatagtagatttctatggattatt 34891091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 263 - 383
Target Start/End: Original strand, 29499310 - 29499430
Alignment:
Q  263 acaataataaagatgtgtttgatatttgtcacttttctaaacaaaagcatttacctttttcttcaagtttatctcatgcctctaccaattttgaattgct 362  Q
    |||||||||||||||| | |||| | || || ||||||||||| || |||||| ||||| |||| |||   | |||||| ||||||||||||||| |  |    
T  29499310 acaataataaagatgtctgtgatttgtgccatttttctaaacataaacatttatcttttacttctagtaattatcatgcttctaccaattttgaacttat 29499409  T
Q  363 tcattttgacatatggggtcc 383  Q
    |||| ||||||| ||||||||    
T  29499410 tcatcttgacatttggggtcc 29499430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 510
Target Start/End: Original strand, 13751 - 13853
Alignment:
Q  408 ccatagatattttctcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttcatgtgaaaaatttc 507  Q
    |||||||||||||||||| || ||||||||  | || |||||| | |||||| ||||| |||| || ||||| |||||||| |  ||||| ||||| |||    
T  13751 ccatagatattttctcaccattcttgatgattacagtagatttgtttggattgttcttttaaaatcaaaatctgaagtttctcaacatgttaaaaacttc 13850  T
Q  508 att 510  Q
    |||    
T  13851 att 13853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 408 - 510
Target Start/End: Original strand, 19653410 - 19653512
Alignment:
Q  408 ccatagatattttctcactatacttgatgaccatagcagatttttatggattattcttctaaagtctaaatcagaagtttcccttcatgtgaaaaatttc 507  Q
    |||||||||||||||||| || ||||||||  | || |||||| | |||||| ||||| |||| || ||||| |||||||| |  ||||| ||||| |||    
T  19653410 ccatagatattttctcaccattcttgatgattacagtagatttgtttggattgttcttttaaaatcaaaatctgaagtttctcaacatgttaaaaacttc 19653509  T
Q  508 att 510  Q
    |||    
T  19653510 att 19653512  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 467
Target Start/End: Complemental strand, 3820209 - 3820156
Alignment:
Q  414 atattttctcactatacttgatgaccatagcagatttttatggattattcttct 467  Q
    ||||||||||||||| |||||||| ||||| |||| | | ||||||||||||||    
T  3820209 atattttctcactattcttgatgatcatagtagatatgtttggattattcttct 3820156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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