View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_11 (Length: 526)
Name: NF11625_low_11
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-155; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 204 - 513
Target Start/End: Original strand, 24370017 - 24370328
Alignment:
| Q |
204 |
ttcaagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaataaattggccaaaggatgtt |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
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| T |
24370017 |
ttcaagagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagactactaaaagaacttcatcaatgaattggccaaaggatgtt |
24370116 |
T |
|
| Q |
304 |
agagctcaggaagttgctcaaaatttcatctcatgcaatccttttttcacaattctcatcaagccaattaatctggtagaacatactcgggtaggattca |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
24370117 |
agagctcaggaagttgctcaaaatttcatctcatgcaatccatttttcacaattctcatcaagccaattaatctggtagaacatactcgggtaggatgca |
24370216 |
T |
|
| Q |
404 |
caaacacaatttttactacatatattcatttatgctgcgattataaattatgatgattgataatagtat--catactatgcagtctgtaccagatttaaa |
501 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24370217 |
caaacacaatttttactacatatattcatttatgctgtgattataaattatgatgattgataatagtattatatactatgcagtctgtaccagatttaaa |
24370316 |
T |
|
| Q |
502 |
aggggttattga |
513 |
Q |
| |
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|||||||||||| |
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| T |
24370317 |
aggggttattga |
24370328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 362
Target Start/End: Original strand, 24358505 - 24358857
Alignment:
| Q |
9 |
gatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaaacaaagatcaccttttg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| | |
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| T |
24358505 |
gatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggacgaatggcttaattggaagaaggctaaacaaagatcacctttcg |
24358604 |
T |
|
| Q |
109 |
tttctcctcgaccacataagaaagttcgaggtt-ggtttggtttcttgattttcttttcagtgtgcatatatataatacataatggattgatgctcttca |
207 |
Q |
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||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
24358605 |
tttctcctcgaccacataaaaaagttcgaggtttggtttggtttcttgattttcttttcagtgtacatat--ataatacataatggattgatgctcttca |
24358702 |
T |
|
| Q |
208 |
agagtttcttcgatgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaataaattggccaaaggatgttagag |
307 |
Q |
| |
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||||||||||| || |||||||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24358703 |
agagtttcttctttgatttacattgcacgcatatatgcaggtgatgatgagaagactactaaaagaacttcatcaataaattggccaaaggatgttagag |
24358802 |
T |
|
| Q |
308 |
ctcaggaagttgctcaaaatttcatctcatgcaatccttttttcacaattctcat |
362 |
Q |
| |
|
||||| |||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
24358803 |
ctcagaaagtagctcaaaatttcatctcaaacaatccttttttcacaattctcat |
24358857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 138; E-Value: 7e-72
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 24364786 - 24364625
Alignment:
| Q |
9 |
gatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaaacaaagatcaccttttg |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24364786 |
gatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggctagacaaagatcacctttta |
24364687 |
T |
|
| Q |
109 |
tttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttcagt |
169 |
Q |
| |
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||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
24364686 |
tttctactcgaccacataagaaagttcgaggtttggtttggtttcttgattttcttttcagt |
24364625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 9 - 167
Target Start/End: Original strand, 24369861 - 24370020
Alignment:
| Q |
9 |
gatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaaacaaagatcaccttttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
24369861 |
gatgaaaatgacaatgttgatcatagtgatgatgatgaatcagttgagattttggatgaatggcttaatcggaagaaggctagacaaagatcaccttttg |
24369960 |
T |
|
| Q |
109 |
tttctcctcgaccacataagaaagttcgagg-ttggtttggtttcttgattttcttttca |
167 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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|
| T |
24369961 |
tttcttctcgaccacataagaaagttcaaggtttggtttggtttcttgattttcttttca |
24370020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 225 - 362
Target Start/End: Complemental strand, 24364541 - 24364404
Alignment:
| Q |
225 |
ttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaataaattggccaaaggatgttagagctcaggaagttgctcaa |
324 |
Q |
| |
|
||||||| |||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||| ||| ||| ||||||||||||||| |||||| |
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| T |
24364541 |
ttacattgcacacatatatgcaggagatcatgagaagactactaaaagaacttcatcaataaactggccgaagaatgctagagctcaggaagtagctcaa |
24364442 |
T |
|
| Q |
325 |
aatttcatctcatgcaatccttttttcacaattctcat |
362 |
Q |
| |
|
||||||||||||||||||||||| || ||| ||||||| |
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| T |
24364441 |
aatttcatctcatgcaatcctttctttacagttctcat |
24364404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 221 - 368
Target Start/End: Original strand, 24355617 - 24355759
Alignment:
| Q |
221 |
tgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaataaattggccaa-aggatgttagagctcaggaagttg |
319 |
Q |
| |
|
||||||| ||| ||||||||||||||||||| | |||| ||| ||||||||||||||||| |||||||| |||| | ||||||||||||||| | |
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| T |
24355617 |
tgttttatattccacacatatatgcaggtgagattaagaaaactgctaaaagaacttcatca-----ttggccaagagga-gctagagctcaggaagtag |
24355710 |
T |
|
| Q |
320 |
ctcaaaatttcatctcatgcaatccttttttcacaattctcatcaagcc |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24355711 |
ctcaaaatttcatctcatgcaatccttttttcacaattctcatcaagcc |
24355759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 433 - 513
Target Start/End: Complemental strand, 24364295 - 24364215
Alignment:
| Q |
433 |
ttatgctgcgattataaattatgatgattgataatagtatcatactatgcagtctgtaccagatttaaaaggggttattga |
513 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24364295 |
ttatgctgtgattataagttatgatgattgataatagtattatactatgcagtctgtaccagatttaaaaggggttattga |
24364215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 25 - 140
Target Start/End: Original strand, 24354862 - 24354974
Alignment:
| Q |
25 |
ttgatcatagtgatgatgataaatcagttgagattttggatgaatggcttaatcggaagaaggctaaacaaagatcaccttttgtttctcctcgaccaca |
124 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| ||||||||||||| |||||| |||| ||||||||||||||| |||||||||||||| || |
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|
| T |
24354862 |
ttgatcatagtgatgatgag---tctgttgagattttggaagaatggcttaatcagaagaatgctagacaaagatcacctttcgtttctcctcgacctca |
24354958 |
T |
|
| Q |
125 |
taagaaagttcgaggt |
140 |
Q |
| |
|
|||||||||| ||||| |
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|
| T |
24354959 |
taagaaagttagaggt |
24354974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 384
Target Start/End: Original strand, 24362479 - 24362642
Alignment:
| Q |
221 |
tgttttacatttcacacatatatgcaggtgatgatgagaagacttctaaaagaacttcatcaataaattggccaaaggatgttagagctcaggaagttgc |
320 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | |||||||| || |||||||| ||||| | |||||||| | || | |||||||| ||||| || |
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| T |
24362479 |
tgttttatatttcacacatatatgcaggtgagattaagaagactactgaaagaactacatcattgaattggcctatgggagctagagctcgagaagtagc |
24362578 |
T |
|
| Q |
321 |
tcaaaatttcatctcatgcaatccttttttcacaattctcatcaagccaattaatctggtagaa |
384 |
Q |
| |
|
| ||| ||||||||| ||||||||||||||||||||||||| ||||| | | ||||||||||| |
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|
| T |
24362579 |
tgcaaaattcatctcaagcaatccttttttcacaattctcataaagcctaatcatctggtagaa |
24362642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 72
Target Start/End: Original strand, 24344574 - 24344634
Alignment:
| Q |
9 |
gatgaaaatgacaatgttgatcatagtgatgatgataaatcagttgagattttggatgaatggc |
72 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
24344574 |
gatgaaaatgacaatgttggtcatagtgatgatg---aatcagttgagattttagatgaatggc |
24344634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 362
Target Start/End: Original strand, 24346558 - 24346651
Alignment:
| Q |
269 |
aaagaacttcatcaataaattggccaaaggatgttagagctcaggaagttgctcaaaatttcatctcatgcaatccttttttcacaattctcat |
362 |
Q |
| |
|
|||||||| ||||| ||||||||||||| | ||||||||||||||| ||| ||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
24346558 |
aaagaactacatcatggaattggccaaagggagctagagctcaggaagtagctttaaaattcatctcaaccaatccttttttcacaattctcat |
24346651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 513
Target Start/End: Original strand, 24355839 - 24355921
Alignment:
| Q |
433 |
ttatgctgcgattataaattatgatgattgataatagtatcatac--tatgcagtctgtaccagatttaaaaggggttattga |
513 |
Q |
| |
|
||||| || |||||||||||| ||||||||||||| ||| |||| ||||||| ||||||| |||| |||||||||||||| |
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|
| T |
24355839 |
ttatgttgtgattataaattaatatgattgataatactattataccatatgcagaatgtaccaaattttaaaggggttattga |
24355921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 513
Target Start/End: Original strand, 24359177 - 24359250
Alignment:
| Q |
443 |
attataaattatgatgattgataatagtatcatactatgcagtctgtacc---agatttaaaaggggttattga |
513 |
Q |
| |
|
|||||| ||||| |||||||||||||||| || ||||||||| |||||| ||||||||||||| ||||||| |
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|
| T |
24359177 |
attatatattatagtgattgataatagtattatgctatgcagtttgtacctttagatttaaaagggattattga |
24359250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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