View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11625_low_12 (Length: 508)
Name: NF11625_low_12
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 22 - 499
Target Start/End: Original strand, 40074703 - 40075180
Alignment:
| Q |
22 |
gttaacaaccagagacagtagttaacaatcaagaaaactgagcaaatgaaccattgttctttatttcagctcaagcatttaacttctatttctaccacta |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40074703 |
gttaacaaccagagacagtagttaacaatcaagaaaactgagcaaatgaaccattgttctttatttcagctcaagcatttaacttctatttctaccacta |
40074802 |
T |
|
| Q |
122 |
tattttccattctataagtaaaatactttgcaaaatccagacacactcaagcttcttttgcatttgttgcttgacataataatcatctaaatttcacagg |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40074803 |
tattttccattctataagtaaaatactttgcaaaatccagacacactcaagcttcttttgcatttgttgcttgacataataatcatctaaatttcacagc |
40074902 |
T |
|
| Q |
222 |
taaataagctaaccctacattcttttatatacgttgggaaaaaatttcccgttatatttcaggaggctgtctttaatccctgcctccctggtgaactatc |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40074903 |
taaataagctaaccctacattcttttatatacgttgggaaaaaatctcccgttatatttcaggaggctgtctttaatccctgcctccctggtgaactatc |
40075002 |
T |
|
| Q |
322 |
tctagtctaggtgacttaaagatatctaagcaaatgaactatgttgtgatatgtgacattacacaactgtaggtactgatatgagcacttcatagaccac |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
40075003 |
tctagtctaggtgacttaaagatatctaagcaaatcaactatgttgtgatatgtgacattacacaactgtaggttctgatatgagcacttcatagaccac |
40075102 |
T |
|
| Q |
422 |
aaatttagttcaacaaatctattttacaagagttaaacatgtggtctcagggtaatgagttcttattgatattcttct |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40075103 |
aaatttagttcaacaaatctattttacaagagttaaacttgtcgtctcagggtaatgagttcttattgatattcttct |
40075180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University