View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11625_low_13 (Length: 499)
Name: NF11625_low_13
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 19 - 276
Target Start/End: Original strand, 39392671 - 39392928
Alignment:
| Q |
19 |
acggtcttagctaccctcttcagcatcgcaattgattcttcgttaccccttatctcctctggatcatcaggtacctcttcctcctttgacatcccacaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39392671 |
acggtcttagctaccctcttcagcatcgcaattgattcttcgttaccccttatctcctctggatcatcaggtacctcttcctcctttgacatcccacaca |
39392770 |
T |
|
| Q |
119 |
catatacctctcctgaaggagnnnnnnnncattagtatttattaatggcttagttatatattacttttagatttcacttttgtgccaatggcaacttcaa |
218 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39392771 |
catatacctctcctgaaggagaaaaaaaacattagtatttattaatggcttagttatatattacttttagatttcacttttgtgccaatggcaacttcaa |
39392870 |
T |
|
| Q |
219 |
ataaacaacaataatttctaagagcatttggaccgtttcatttttaagtagtattcaa |
276 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
39392871 |
ataaacaacaataatttctaagaacatttggaccatttcatttttaagtagtattcaa |
39392928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 342 - 488
Target Start/End: Original strand, 39392994 - 39393136
Alignment:
| Q |
342 |
gccaatgttagtttattatgacgatcgagccgaaacctcatcttttaaactctttcaacgttccttagttcatcaaccaaacaaccaatacgggatccct |
441 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |
|
|
| T |
39392994 |
gccaatgttagtttat---gacgatcgagccgaaacctcatcttttaaactctttcaatgttccttagttcatcaaccaaacaaccaatgctggatccct |
39393090 |
T |
|
| Q |
442 |
taannnnnnnnnnatagacatttggtttgtttatgtcaatttttcat |
488 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
39393091 |
taa-tttttttttatagacatttggtttgtttatgtcaatttttcat |
39393136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 30754316 - 30754401
Alignment:
| Q |
19 |
acggtcttagctaccctcttcagcatcgcaattgattcttcgttaccccttatctcctctggatcatcaggtacctcttcctcctt |
104 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30754316 |
acggtcttagctacccttttcagcatcgcaattgattcactgttaccccttatctcctctggatcatcaggtacctcttcctcctt |
30754401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University