View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_14 (Length: 496)
Name: NF11625_low_14
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 14200215 - 14200569
Alignment:
| Q |
16 |
aattgcttattacaaatgacgaccattttaatataaatggcctttggtaaaattaatactactatataggattctaacttttaaattgtttgttttaaaa |
115 |
Q |
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| T |
14200215 |
aattgcttattacaaatgacgaccattttaatataaatggcctttggtaaaattaataata---tataggattctaacttttaaattgtttgttttaaaa |
14200311 |
T |
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| Q |
116 |
tattttctaagttgcaatatataattatcgtgtccaatgatataatgtgactgctgaaatgttgaatattaattgctttt-----atgcacacacgtttt |
210 |
Q |
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| T |
14200312 |
tattttctaagttgcaatatataattatcgtgtccaatgatataatgtgactgctgaaatgttgaatagtaattgcttttattttatgcacacacgtttt |
14200411 |
T |
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| Q |
211 |
tgtatgataatacgaagttgatctatgtccttatatttccccgctccttaccatgttttacggcttcgctcaatgcatttgaactggacatgtatgagtt |
310 |
Q |
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| T |
14200412 |
tgtatgataatacgaagttgatttatgtccttatatttccccgctccttaccatgttttacgacttcgctcaatgcatttgaactggacatgtatgagtt |
14200511 |
T |
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| Q |
311 |
ctttgtaattgtgggttgacacttgacatgttgtatggatttctttgtatgcatgagttgacgtg |
375 |
Q |
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| T |
14200512 |
ctttgtaagtgtggg-------ttgacatgttgtatggatttctttgtatgcatgagttgacgtg |
14200569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 375
Target Start/End: Original strand, 14201171 - 14201213
Alignment:
| Q |
333 |
ttgacatgttgtatggatttctttgtatgcatgagttgacgtg |
375 |
Q |
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| T |
14201171 |
ttgacatgttgtatggagttctttgtacgcatgagtttacgtg |
14201213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 164 - 306
Target Start/End: Complemental strand, 24641924 - 24641782
Alignment:
| Q |
164 |
gactgctgaaatgttgaatattaattgcttttatgcacacacgtttttgtatgataatacgaagttgatctatgtccttatatttccccgctccttacca |
263 |
Q |
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| T |
24641924 |
gactgcttaaattgtgaacattaattgcttttatgcacacatgttcttgtattatcatacaaagttagtttatgtccttttattgccctgctccttaccg |
24641825 |
T |
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| Q |
264 |
tgttttacggcttcgctcaatgcatttgaactggacatgtatg |
306 |
Q |
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| T |
24641824 |
ttttttatggcttcgatcgatgcatttgagctggatatgtatg |
24641782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 177 - 306
Target Start/End: Complemental strand, 27061430 - 27061301
Alignment:
| Q |
177 |
ttgaatattaattgcttttatgcacacacgtttttgtatgataatacgaagttgatctatgtccttatatttccccgctccttaccatgttttacggctt |
276 |
Q |
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| T |
27061430 |
ttgaacattgattgcttttatgaacacatgttcttgtattatcatacaaagttagtttatgtccttttattgccctgctccttacctttgtttatggctt |
27061331 |
T |
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| Q |
277 |
cgctcaatgcatttgaactggacatgtatg |
306 |
Q |
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| T |
27061330 |
tgatcagtgcatttgagctggatatgtatg |
27061301 |
T |
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