View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_16 (Length: 481)
Name: NF11625_low_16
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 25 - 471
Target Start/End: Original strand, 46123358 - 46123805
Alignment:
| Q |
25 |
ggtccattttagacctagagctacatataatgcatgtccggatatagagatttgtgtgtgattttcaactgcggaatagaannnnnnnncatcttttact |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
46123358 |
ggtccattttagacctagagctacatataatgcatgtccggatatagagatttgtgtgtgattttcaactgcggagtagaattttttttcatcttttact |
46123457 |
T |
|
| Q |
125 |
cttaacgttgtttaacaggtgaaaaccattcctgcaatgacactggccttattgtctaacgaccctgctgcacaacttgaagcaactactcagtttggaa |
224 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46123458 |
cttaatgttgtttaacaggtgaaaaccattcctgcaatgacactggccttattgtctaacgaccctgctgcacaacttgaagcaactactcagtttggaa |
46123557 |
T |
|
| Q |
225 |
agctactatcagggggtatgaatgtaatcattatattttatttgggatgtaatactcttcttttaatgtgatgcctaaattatatgataccactgtgtaa |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
46123558 |
agctactatcagggggtatgaatgtaatcattatattttatttgggatgtaatactcttcttctaatgtgatgcctaaattatatgataccactgtgtaa |
46123657 |
T |
|
| Q |
325 |
cgtcctcctcgagtttactttt-tnnnnnnnnngtattatacattgtatataacatagtagtgtatgtgtgttttcctaaatcatgatgtagttctcata |
423 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46123658 |
cgtcctcctcgagtttacttttaaaaaaaaaaagtattatacattgtatataacatagtagtgtatgtgtgtttccctaaatcatgatgtagttctcata |
46123757 |
T |
|
| Q |
424 |
agttcttaatttttaaccaaattttgaacatttgccgacacatctctg |
471 |
Q |
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| T |
46123758 |
agttcttaatttttaaccaaattttgaacatttgccgacacatctctg |
46123805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 119 - 346
Target Start/End: Original strand, 46702264 - 46702490
Alignment:
| Q |
119 |
tttactcttaacgttgtttaacaggtgaaaaccattcctgcaatgacactggccttattgtctaacgaccctgctgcacaacttgaagcaactactcagt |
218 |
Q |
| |
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||||||||||| | ||||||||||| | |||||||||||||||||| || || |||| |||| ||||||||||||||||||| |||||||||||||||| |
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| T |
46702264 |
tttactcttaatggtgtttaacaggcgcaaaccattcctgcaatgaaacagggcttactgtcggacgaccctgctgcacaactggaagcaactactcagt |
46702363 |
T |
|
| Q |
219 |
ttggaaagctactatcagggggtatgaatgtaatcattatattttatttgggatgtaatactcttcttttaatgtgatgcctaaattatatgataccact |
318 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||| |||| |||||||||| | | ||| | |||||||||||| | ||| ||||| |
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| T |
46702364 |
ttggaaagctactgtcagggggtatgaatgtagtcattatattttatctggggtgtaatactcgtttcttatgtttatgcctaaatta-acgatgccact |
46702462 |
T |
|
| Q |
319 |
gtgtaacgtcctcctcgagtttactttt |
346 |
Q |
| |
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||||| |||||| || || |||||||| |
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| T |
46702463 |
atgtaatgtcctcatctagattactttt |
46702490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 119 - 471
Target Start/End: Original strand, 46129479 - 46129827
Alignment:
| Q |
119 |
tttactcttaacgttgtttaacaggtgaaaaccattcctgcaatgacactggccttattgtctaacgaccctgctgcacaacttgaagcaactactcagt |
218 |
Q |
| |
|
||||||||||| ||||||||||||| ||||| ||| |||||||| | || |||| |||| ||||||||||||||||||| |||||| ||||||||| |
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|
| T |
46129479 |
tttactcttaatgttgtttaacaggcacaaaccgttcttgcaatgaaaaaggacttactgtcggacgaccctgctgcacaactggaagcagctactcagt |
46129578 |
T |
|
| Q |
219 |
ttggaaagctactatcagggggtatgaatgtaatcattatattttatttgggatgtaatactcttcttttaatgtgatgcctaaattatatgataccact |
318 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | || ||||||| |||| ||| ||||| | | ||| ||| ||||||||||| |||||| ||||| |
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| T |
46129579 |
ttggaaagctactgtcagggggtatgaatgtagtggttgtattttacctggggtgttttactcgtttctta-tgttatgcctaaattctatgatgccact |
46129677 |
T |
|
| Q |
319 |
gtgtaacgtcctcctcgagtttactttttnnnnnnnnn-gtattatacattgtatataacatagtagtgtatgtgtgttttcctaaatcatgatgtagtt |
417 |
Q |
| |
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||||| |||||| || || |||||||| || ||| ||||| |||| |||| | ||||||| ||||||||||||||||||| || |
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| T |
46129678 |
gtgtattgtcctcatctagattacttttaatgaatcaaagtgttacacattatataatctatag--gcgtatgtg--ttttcctaaatcatgatgtggtg |
46129773 |
T |
|
| Q |
418 |
ctcataagttcttaatttttaaccaaattttgaacatttgccgacacatctctg |
471 |
Q |
| |
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| T |
46129774 |
cacataagttcttaatttttaaccaaattttgaacatttgccgacacatctctg |
46129827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 391 - 456
Target Start/End: Original strand, 46702532 - 46702596
Alignment:
| Q |
391 |
tgtgttttcctaaatcatgatgtagttctcataagttcttaatttttaaccaaattttgaacattt |
456 |
Q |
| |
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|||||||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||||||| |
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| T |
46702532 |
tgtgttttcctaaatcatgatgtagtgcacataagttcttaattgttaaccaaa-tttgaacattt |
46702596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 62
Target Start/End: Original strand, 46129394 - 46129431
Alignment:
| Q |
25 |
ggtccattttagacctagagctacatataatgcatgtc |
62 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||| |
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| T |
46129394 |
ggtccatgttagagctagagctacatataatgcatgtc |
46129431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 89
Target Start/End: Original strand, 45888090 - 45888154
Alignment:
| Q |
25 |
ggtccattttagacctagagctacatataatgcatgtccggatatagagatttgtgtgtgatttt |
89 |
Q |
| |
|
|||||| || ||| ||||||||||||| ||||||||| | | |||||| ||||||||||||||| |
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| T |
45888090 |
ggtccaattaagagctagagctacatacaatgcatgttcagggatagagctttgtgtgtgatttt |
45888154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 46702209 - 46702245
Alignment:
| Q |
26 |
gtccattttagacctagagctacatataatgcatgtc |
62 |
Q |
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|||||||||||| ||||||||||||||||||||||| |
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| T |
46702209 |
gtccattttagagttagagctacatataatgcatgtc |
46702245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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