View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11625_low_19 (Length: 450)

Name: NF11625_low_19
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11625_low_19
NF11625_low_19
[»] chr3 (1 HSPs)
chr3 (22-443)||(6407035-6407456)
[»] chr4 (5 HSPs)
chr4 (20-285)||(40112935-40113200)
chr4 (281-443)||(40094474-40094636)
chr4 (181-284)||(2662538-2662641)
chr4 (19-108)||(2662376-2662465)
chr4 (208-269)||(9004766-9004827)
[»] chr1 (1 HSPs)
chr1 (18-444)||(653902-654327)
[»] chr6 (1 HSPs)
chr6 (215-335)||(3690402-3690522)
[»] chr5 (3 HSPs)
chr5 (208-335)||(32074058-32074185)
chr5 (181-317)||(3019605-3019741)
chr5 (19-108)||(3019443-3019532)
[»] chr2 (2 HSPs)
chr2 (208-335)||(28083395-28083522)
chr2 (208-269)||(1109102-1109163)


Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 22 - 443
Target Start/End: Original strand, 6407035 - 6407456
Alignment:
Q  22 cctgatctctcatttgcaatcaacaagctctcccaattcatgcataaacctacatcccttcatcttcaacatttaaagcggctacttcgctacattaagg 121  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6407035 cctgatctctcatttgcaatcaacaagctctcccaattcttgcataaacctacatcccttcatcttcaacatttaaagcggctacttcgctacattaagg 6407134  T
Q  122 gaaccattaactttggcatactcttaaagaaaccatcctcattcaatcttcttgcctttacagatgcagactggggaggaaatatggatgaccgcacctc 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6407135 gaaccattaactttggcatactcttaaagaaaccatcctcattcaatcttcttgcctttacagatgcagactggggaggaaatatggatgaccgcacctc 6407234  T
Q  222 aacatcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgtactgtagcacgatcatcaaccgaggctgaataccgt 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  6407235 aacatcagcatatcttatcttttttggaggtaatcctatttcttggctatcacaaaaacaacgtactgtagcacgatcatcaactgaggctgaataccgt 6407334  T
Q  322 gttgtagccactgcatctgttgaactcatgtggcttcaaaatttgcttcaagagcttcatataccattgtcgaaaccacctctattattatgtgacaatg 421  Q
    | |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6407335 gctgtagccactacatctgctgaactcatgtggcttcaaaatttgcttcaagagcttcatataccattgtcgaaaccacctctattattatgtgacaatg 6407434  T
Q  422 taggtgctacatatctctgctc 443  Q
    ||||||||||||||||||||||    
T  6407435 taggtgctacatatctctgctc 6407456  T

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Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 40113200 - 40112935
Alignment:
Q  20 ggcctgatctctcatttgcaatcaacaagctctcccaattcatgcataaacctacatcccttcatcttcaacatttaaagcggctacttcgctacattaa 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  40113200 ggcctgatctctcatttgcaatcaacaagctctcccaattcatgcataaacctatatcccttcatcttcaacatttaaagcggctacttcgctacattaa 40113101  T
Q  120 gggaaccattaactttggcatactcttaaagaaaccatcctcattcaatcttcttgcctttacagatgcagactggggaggaaatatggatgaccgcacc 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40113100 gggaaccattaactttggcatactcttaaagaaaccatcctcattcaatcttcttgcctttacagatgcagactggggaggaaatatggatgaccgcacc 40113001  T
Q  220 tcaacatcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgt 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40113000 tcaacatcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgt 40112935  T

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Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 281 - 443
Target Start/End: Complemental strand, 40094636 - 40094474
Alignment:
Q  281 aacgtactgtagcacgatcatcaaccgaggctgaataccgtgttgtagccactgcatctgttgaactcatgtggcttcaaaatttgcttcaagagcttca 380  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  40094636 aacgtactgtagcacgatcatcaaccgaggctgaataccgtgctgtagccactgcatctgctgaactcacgtggcttcaaaatttgcttcaagagcttca 40094537  T
Q  381 tataccattgtcgaaaccacctctattattatgtgacaatgtaggtgctacatatctctgctc 443  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  40094536 tataccattgtcgaaaccacctctattattatgtgacaatgtaggtgctacatgtctctgctc 40094474  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 284
Target Start/End: Original strand, 2662538 - 2662641
Alignment:
Q  181 acagatgcagactggggaggaaatatggatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaac 280  Q
    |||||||| || ||||| || ||||| |||||||| || || ||||| |||||||| || | | ||||||||||||||||||||||||| ||| | ||||    
T  2662538 acagatgctgattggggtggcaatatcgatgaccgtacttccacatctgcatatctaatatatcttggaggtaatcctatttcttggctctcaaggaaac 2662637  T
Q  281 aacg 284  Q
    ||||    
T  2662638 aacg 2662641  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 2662376 - 2662465
Alignment:
Q  19 aggcctgatctctcatttgcaatcaacaagctctcccaattcatgcataaacctacatcccttcatcttcaacatttaaagcggctactt 108  Q
    |||||||| || || ||||| |||||||| ||||| |||||||||||||| ||||||   || ||| |||||||| | || |||||||||    
T  2662376 aggcctgacctttcctttgccatcaacaaactctctcaattcatgcataagcctacaagtctccattttcaacatctcaaacggctactt 2662465  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 9004827 - 9004766
Alignment:
Q  208 gatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttggct 269  Q
    ||||| ||||| || || ||||| |||||||| |||||||| ||||||||||| ||||||||    
T  9004827 gatgatcgcacatccacttcagcgtatcttatattttttggtggtaatcctatctcttggct 9004766  T

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Target: chr1 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 654327 - 653902
Alignment:
Q  18 caggcctgatctctcatttgcaatcaacaagctctcccaattcatgcataaacctacatcccttcatcttcaacatttaaagcggctacttcgctacatt 117  Q
    |||| ||||||| ||| |||| ||||||||||| || ||||||||| | ||||| ||||| |||||||| |||||| ||||| | |||||||| ||  |     
T  654327 caggactgatctttcaattgccatcaacaagctttctcaattcatgtacaaaccaacatcacttcatctgcaacatctaaagagactacttcgttatcta 654228  T
Q  118 aagggaaccattaactttggcatactcttaaagaaaccatcctcattcaatcttcttgcctttacagatgcagactggggaggaaatatggatgaccgca 217  Q
    ||||  |||||||| ||||||||  |  | ||| ||||||| || ||| |||||  ||| || || |||||||||||||| || |||||||| || ||||    
T  654227 aaggctaccattaattttggcatttttctgaagcaaccatcatccttccatctttatgctttcacggatgcagactggggtggcaatatggaagatcgca 654128  T
Q  218 cctcaacatcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgtactgtagcacgatcatcaaccgaggctgaata 317  Q
    | || ||||  |||||||| || ||| ||| | |||| || |  |||||| ||||||| |||||||| ||||||||||| || ||||| |||||||||||    
T  654127 catccacatttgcatatctcatttttcttgaaagtaaccccacctcttggttatcacgcaaacaacgcactgtagcacg-tcttcaactgaggctgaata 654029  T
Q  318 ccgtgttgtagccactgcatctgttgaactcatgtggcttcaaaatttgctt-caagagcttcatataccattgtcgaaaccacctctattattatgtga 416  Q
    |||||  || ||||||||| ||| ||||||  |||||| ||| || |  ||| || || |||| | ||||| |||| ||||||||  |  || |||||||    
T  654028 ccgtgcagtggccactgcaactgctgaactagtgtggc-tcacaagtctcttacatgaacttcgtctaccagtgtcaaaaccaccattgctactatgtga 653930  T
Q  417 caatgtaggtgctacatatctctgctcc 444  Q
    ||| || ||||| |||||||||||||||    
T  653929 caacgttggtgcaacatatctctgctcc 653902  T

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Target: chr6 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 215 - 335
Target Start/End: Complemental strand, 3690522 - 3690402
Alignment:
Q  215 gcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgtactgtagcacgatcatcaaccgaggctga 314  Q
    ||||||| |||||||||||| |||| |||||||| ||||||||||| || ||||| ||| | ||||||||||| || ||||||||||| || ||||| ||    
T  3690522 gcacctccacatcagcatatattatattttttggtggtaatcctatctcatggctctcaaggaaacaacgtaccgtggcacgatcatccactgaggcaga 3690423  T
Q  315 ataccgtgttgtagccactgc 335  Q
    ||| ||||  || ||||||||    
T  3690422 atatcgtgcagttgccactgc 3690402  T

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Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 208 - 335
Target Start/End: Original strand, 32074058 - 32074185
Alignment:
Q  208 gatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgtactgtagcacgatcatcaaccg 307  Q
    ||||| |||||||| |||||||||||| |||| |||||||| ||||||||||| || ||||| ||| | ||||||||||| || ||||||||||| |  |    
T  32074058 gatgatcgcacctccacatcagcatatattatattttttggtggtaatcctatctcatggctctcaaggaaacaacgtaccgtggcacgatcatccattg 32074157  T
Q  308 aggctgaataccgtgttgtagccactgc 335  Q
    |||| ||||| ||||  || ||||||||    
T  32074158 aggcagaatatcgtgcagttgccactgc 32074185  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 181 - 317
Target Start/End: Original strand, 3019605 - 3019741
Alignment:
Q  181 acagatgcagactggggaggaaatatggatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaac 280  Q
    |||||||| || ||||  || ||||| |||||||| || || ||||| |||||||| || | ||||||||||||||||||||||||||| ||| | ||||    
T  3019605 acagatgctgattgggatggcaatattgatgaccgtacttccacatctgcatatctaatatattttggaggtaatcctatttcttggctctcaaggaaac 3019704  T
Q  281 aacgtactgtagcacgatcatcaaccgaggctgaata 317  Q
    |||| || || ||  | ||||| || |||||||||||    
T  3019705 aacgcaccgttgctaggtcatccactgaggctgaata 3019741  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 3019443 - 3019532
Alignment:
Q  19 aggcctgatctctcatttgcaatcaacaagctctcccaattcatgcataaacctacatcccttcatcttcaacatttaaagcggctactt 108  Q
    |||||||| || || ||||| |||||||| ||||| |||||||||||||| ||||||   || ||| |||||||| | || |||||||||    
T  3019443 aggcctgacctttcctttgccatcaacaaactctctcaattcatgcataagcctacaagtctccattttcaacatctcaaacggctactt 3019532  T

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Target: chr2 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 208 - 335
Target Start/End: Complemental strand, 28083522 - 28083395
Alignment:
Q  208 gatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttggctatcacgaaaacaacgtactgtagcacgatcatcaaccg 307  Q
    ||||| |||||||| |||||||||||| |||| |||||||| ||||||||||| || ||||| ||| | ||||||||||| || ||||||||||| |  |    
T  28083522 gatgatcgcacctccacatcagcatatattatattttttggtggtaatcctatctcatggctctcaaggaaacaacgtaccgtggcacgatcatccaatg 28083423  T
Q  308 aggctgaataccgtgttgtagccactgc 335  Q
    |||| ||||| ||||  || ||||||||    
T  28083422 aggcagaatatcgtgcagttgccactgc 28083395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 269
Target Start/End: Complemental strand, 1109163 - 1109102
Alignment:
Q  208 gatgaccgcacctcaacatcagcatatcttatcttttttggaggtaatcctatttcttggct 269  Q
    ||||| ||||| || || ||||| |||||||| |||||||| ||||||||||| ||||||||    
T  1109163 gatgatcgcacatccacttcagcgtatcttatattttttggtggtaatcctatctcttggct 1109102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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