View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11625_low_2 (Length: 909)

Name: NF11625_low_2
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11625_low_2
NF11625_low_2
[»] chr6 (8 HSPs)
chr6 (268-822)||(9818087-9818646)
chr6 (41-199)||(9818714-9818872)
chr6 (264-520)||(9824114-9824365)
chr6 (818-899)||(9772398-9772479)
chr6 (76-199)||(9824393-9824520)
chr6 (70-186)||(4966829-4966939)
chr6 (268-357)||(4966586-4966672)
chr6 (267-357)||(4966656-4966748)
[»] chr5 (4 HSPs)
chr5 (267-489)||(6408186-6408410)
chr5 (328-429)||(1000247-1000339)
chr5 (365-437)||(6411475-6411547)
chr5 (334-425)||(1000732-1000823)
[»] chr4 (1 HSPs)
chr4 (353-433)||(43545664-43545748)
[»] chr3 (3 HSPs)
chr3 (391-449)||(41503524-41503582)
chr3 (141-181)||(9488740-9488780)
chr3 (126-186)||(23202777-23202837)


Alignment Details
Target: chr6 (Bit Score: 431; Significance: 0; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 268 - 822
Target Start/End: Complemental strand, 9818646 - 9818087
Alignment:
Q  268 cttggagactagaacttatttcctaatttgctttatgttatgtttgaatattagatatgttgttattttgagccttggaggctacaacttatttgatact 367  Q
    ||||||| ||| ||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||    
T  9818646 cttggaggctataacttatttcctattttgctttatgttatgttggaatattcgatatgttgttattttgagcctcggaggctacaacttatttgctact 9818547  T
Q  368 tgaattatattatgtttaaaatgttagtagcaatgaactttgatgattagtaatgaatatgtgtttaattgtgtgcattctttgctactttagatttcat 467  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  9818546 tgaattatattatgtttaaagtgttactagcaacgaactttgatgattagtaatgaatatgtgtttaattttgtgcgttctttgctactttagatttcat 9818447  T
Q  468 atctgtagtgcttgtattgttttcctagatgattcgacttagtgatcataccgctacatgttatggcgttttgggggtcggacactacgctgtctactac 567  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  9818446 atctgtagtgcttgtattgttttcctagataattcgacttagtgatcataccgctacatgttatggcgttttgggggtcggacactatgctgtctactac 9818347  T
Q  568 cgactttaattttgatgaatatgaggctcaaatttgtcatgtttgatgatgaataagaaacagaagtatgcacaacaatgtcgcacttggcataatgtat 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9818346 cgactttaattttgatgaatatgaggctcaaatttgtcatgtttgatgatgaataagaaacagaagtatgcacaacaatgtcgcacttggcataatgtat 9818247  T
Q  668 g-----nnnnnnnnnnnnnnntactgaagctaacaaatcaaaacttcaggttcattttagttttgaacacatcaaaatccaaacttaaggttcatttaag 762  Q
    |                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  9818246 gaaaaataaaaaataaaaaaatactgaagctaacaaatcaaaacttcaggttcattttagttttgaacacatcaaaatccaaacttaaggtttatttaag 9818147  T
Q  763 tttctgttgtccattcgcttttcactcaacaacaaatcgctaccatagtcaagttcatcg 822  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  9818146 tttctgttgtccattcgcttttcactcaacaacaaatcgataccatagtcaagttcatcg 9818087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 155; E-Value: 8e-82
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 9818872 - 9818714
Alignment:
Q  41 atgacaagtgagtgtgattctgtccctagaaaatggatgtcttaaataagtaatactctttcttgattatttttcttttgagttccatttgagtttcttc 140  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  9818872 atgacaagtgagtgtgattctgtccctagaaaatggatgtcttaaataagtaatactctttcttgattatttttcttttgagttccatttgagttttttc 9818773  T
Q  141 taattgcaggttgtgaaggagccctttgatgcaacttttggtaatagggaatgctgttg 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9818772 taattgcaggttgtgaaggagccctttgatgcaacttttggtaatagggaatgctgttg 9818714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 264 - 520
Target Start/End: Complemental strand, 9824365 - 9824114
Alignment:
Q  264 gagccttggagactagaacttatttcctaatttgctttatgttatgtttgaatattagatatgttgttattttgagccttggaggctacaacttatttga 363  Q
    ||||||||||| ||| ||||||||||||  |||| |||||| |||||||||||||||||||||||   | |||||||| ||||||||||||||||||||     
T  9824365 gagccttggaggctataacttatttccttttttgatttatgatatgtttgaatattagatatgtt---actttgagccatggaggctacaacttatttgc 9824269  T
Q  364 tacttgaattatattatgtttaaaatgttagtagcaatgaactttgatgattagtaatgaatatgtgtttaattgtgtgcattctttgctactttagatt 463  Q
    |||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||  ||||||||| ||||||||||||| |  ||||| ||    
T  9824268 tacttgaattatattatgtttaaagtgttagtagcaaataactttgatgattagtaatgaata--tgtttaattttgtgcattctttgatgttttagttt 9824171  T
Q  464 tcatatctgtagtgcttgtattgttttcctagatgattcgacttagtgatcataccg 520  Q
     ||||| |||||||||||||||||||||||| |  ||| ||| |||||| |||||||    
T  9824170 ccatatgtgtagtgcttgtattgttttcctatagaatttgacgtagtgaccataccg 9824114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 818 - 899
Target Start/End: Complemental strand, 9772479 - 9772398
Alignment:
Q  818 catcgcagcgattcatctcgatggaccagcactcctaactctcattatgcgggatttatcagaaaacactcctttgtctctg 899  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9772479 catcgcagcgattcagctcgatggaccagcactcctaactctcattatgcgggatttatcagaaaacactcctttgtctctg 9772398  T

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Target: chr6; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 9824520 - 9824393
Alignment:
Q  76 gatgtcttaaataagtaatactctttcttgattattttt-ctt-ttga--gttccatttgagtttcttctaattgcaggttgtgaaggagccctttgatg 171  Q
    ||||| ||||||||| ||||||||||||||||| ||||| ||| ||||  |||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  9824520 gatgtattaaataagaaatactctttcttgatttttttttcttcttgaaagttccatttgagtttcttttaattgcaggttgtgaaggagccctttgaag 9824421  T
Q  172 caacttttggtaatagggaatgctgttg 199  Q
    |||||||| |||||||| ||||||||||    
T  9824420 caactttttgtaataggaaatgctgttg 9824393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 70 - 186
Target Start/End: Complemental strand, 4966939 - 4966829
Alignment:
Q  70 aaaatggatgtcttaaataagtaatactctttcttgattatttttcttttgagttccatttgagtttcttctaattgcaggttgtgaaggagccctttga 169  Q
    ||||| |||||||| |||||| |||||||||    |||| ||||||||  ||||| ||| |||||||||| ||||||||||||||||||||||| ||||     
T  4966939 aaaattgatgtcttgaataagaaatactctt----gattttttttctt--gagttacatatgagtttcttttaattgcaggttgtgaaggagccatttgt 4966846  T
Q  170 tgcaacttttggtaata 186  Q
    |||||||||||| ||||    
T  4966845 tgcaacttttggcaata 4966829  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 268 - 357
Target Start/End: Complemental strand, 4966672 - 4966586
Alignment:
Q  268 cttggagactagaacttatttcctaatttgctttatgttatgtttgaatattagatatgttgttattttgagccttggaggctacaactt 357  Q
    ||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||||||    ||| |||||||||||||||| ||| |||||    
T  4966672 cttggaggctagaacttgtttcctattttgctttatgctatgtttgaatattagat---gtgtcattttgagccttggagcctagaactt 4966586  T

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Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 4966748 - 4966656
Alignment:
Q  267 ccttggagactagaacttatttcctaatttgctttatgttatgtttgaatattagatatgttgt--tattttgagccttggaggctacaactt 357  Q
    |||||||| ||||||||||||||| | | |||||||||||||||||||||||| |||  |||||  ||||||||  ||||||||||| |||||    
T  4966748 ccttggaggctagaacttatttccaattctgctttatgttatgtttgaatattggattagttgtgctattttgaatcttggaggctagaactt 4966656  T

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Target: chr5 (Bit Score: 90; Significance: 5e-43; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 267 - 489
Target Start/End: Original strand, 6408186 - 6408410
Alignment:
Q  267 ccttggagactagaacttatttcctaatttgctttatgttatgtttgaatattagatatgttgttattttgagccttggaggctacaacttatttgatac 366  Q
    |||||||| ||||||||||||||||| |||||||||| || ||||||||| |||||||||||   || |||||| |||||| ||| |||||||||| |||    
T  6408186 ccttggaggctagaacttatttcctattttgctttatattctgtttgaatgttagatatgtt---atgttgagctttggagactagaacttatttgctac 6408282  T
Q  367 ttgaattatatt-----atgtttaaaatgttagtagcaatgaactttgatgattagtaatgaatatgtgtttaattgtgtgcattctttgctactttaga 461  Q
      ||||||||||     |||||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||   |  | |||     
T  6408283 aagaattatattgtattatgtttgaaatattaatagcaatgaactttgatgattagtaatgaatttgtgtttaattctgtgcattcttctatgttctagt 6408382  T
Q  462 tttcatatctgtagtgcttgtattgttt 489  Q
    |||||||| ||||||||||| |||||||    
T  6408383 tttcatatgtgtagtgcttgaattgttt 6408410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 328 - 429
Target Start/End: Complemental strand, 1000339 - 1000247
Alignment:
Q  328 tgttattttgagccttggaggctacaacttatttgatacttgaattatattatgtttaaaatgttagtagcaatgaactttgatgattagtaatgaatat 427  Q
    |||||||||||||||||| ||||| ||||||||||   |||      ||||||||||||||| |||||||||||||| |||||||| || ||||||||||    
T  1000339 tgttattttgagccttggtggctagaacttatttg---ctt------tattatgtttaaaatattagtagcaatgaattttgatgagtattaatgaatat 1000249  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 365 - 437
Target Start/End: Original strand, 6411475 - 6411547
Alignment:
Q  365 acttgaattatattatgtttaaaatgttagtagcaatgaactttgatgattagtaatgaatatgtgtttaatt 437  Q
    |||||||||||||||||||| |||| ||  |||||||||||||||||||| ||||  |||| |||||||||||    
T  6411475 acttgaattatattatgtttgaaatatttatagcaatgaactttgatgatcagtacagaatttgtgtttaatt 6411547  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 334 - 425
Target Start/End: Original strand, 1000732 - 1000823
Alignment:
Q  334 tttgagccttggaggctacaacttatttgatacttgaattatattatgtttaaaatgttagtagcaatgaactttgatgattagtaatgaat 425  Q
    ||||| |||||||||||| ||||||||||    ||   ||| ||||||||| |||| ||| |||||||||||||||||||||| | ||||||    
T  1000732 tttgaaccttggaggctagaacttatttgcatttttctttagattatgtttgaaatattattagcaatgaactttgatgattatttatgaat 1000823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 353 - 433
Target Start/End: Original strand, 43545664 - 43545748
Alignment:
Q  353 aacttatttgatacttgaattatattatgtttaaaatgttag----tagcaatgaactttgatgattagtaatgaatatgtgttt 433  Q
    |||||||||| ||||||||||||||||||||| |||| ||||     |||||||||||||| |||||||||| ||||||||||||    
T  43545664 aacttatttgctacttgaattatattatgtttgaaatattaggagcaagcaatgaactttgttgattagtaacgaatatgtgttt 43545748  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 391 - 449
Target Start/End: Complemental strand, 41503582 - 41503524
Alignment:
Q  391 ttagtagcaatgaactttgatgattagtaatgaatatgtgtttaattgtgtgcattctt 449  Q
    ||||||||||||||||| ||| ||| || |||||||||||||| ||| |||||||||||    
T  41503582 ttagtagcaatgaacttcgattatttgttatgaatatgtgttttattttgtgcattctt 41503524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 9488740 - 9488780
Alignment:
Q  141 taattgcaggttgtgaaggagccctttgatgcaacttttgg 181  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  9488740 taattgtaggttgtgaaggagccctttggtgcaacttttgg 9488780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 23202837 - 23202777
Alignment:
Q  126 catttgagtttcttctaattgcaggttgtgaaggagccctttgatgcaacttttggtaata 186  Q
    ||||||| ||| || |||||| |||||||||| |||||||||| |||||||||||| ||||    
T  23202837 catttgaatttattttaattgtaggttgtgaacgagccctttggtgcaacttttggcaata 23202777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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