View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_20 (Length: 437)
Name: NF11625_low_20
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_20 |
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Alignment Details
Target: chr2 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 276 - 423
Target Start/End: Complemental strand, 26306216 - 26306069
Alignment:
| Q |
276 |
attacagcaaagataacaacaaaacaagttcatcaaaaacaagcatggaaacaaaaggtggagaagttagaaggcttcacataatctacttccttagtca |
375 |
Q |
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| T |
26306216 |
attacagcaaagataacaacaaaacaagttcatcaaaaacaagcatggaaacaaaaggtggagaagttagaaggcttcacataatctacttccttagtca |
26306117 |
T |
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| Q |
376 |
catgggtggtcatgcagaacatcctcatctcattcgtgttcttcatct |
423 |
Q |
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| T |
26306116 |
catgggtggtcatgcagaacatcctcatctcattcgtgttcttcatct |
26306069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 26306474 - 26306367
Alignment:
| Q |
20 |
aaagatatcagtattatacgttgatatgttttggtaacagttcttttaccagcatgccggcagagagacaaagatctcttttgggtttttccatgttagt |
119 |
Q |
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| T |
26306474 |
aaagatatcagtattatacgttgatatgttttggtaacagttcttttaccagcatgccggcagagagacaaagatctcttttgggtttttccatgttagt |
26306375 |
T |
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| Q |
120 |
tgtttttc |
127 |
Q |
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|||||||| |
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| T |
26306374 |
tgtttttc |
26306367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 341 - 423
Target Start/End: Complemental strand, 781550 - 781468
Alignment:
| Q |
341 |
gttagaaggcttcacataatctacttccttagtcacatgggtggtcatgcagaacatcctcatctcattcgtgttcttcatct |
423 |
Q |
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| T |
781550 |
gttagaatgcttcatataatgtacttccttagtcacatgcgtggtcattcagaacagcctcatctctttcgtgttcttcatct |
781468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 311 - 419
Target Start/End: Complemental strand, 46209455 - 46209350
Alignment:
| Q |
311 |
aaaacaagcatggaaacaaaaggtggagaagttagaaggcttcacataatctacttccttagtcacatgggtggtcatgcagaacatcctcatctcattc |
410 |
Q |
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||||||||||||||| |||| ||| |||||||||||||||||||||||| ||| |||| ||||||||||| |||||||||| || ||||||| |
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| T |
46209455 |
aaaacaagcatggaagcaaagtgtg---aagttagaaggcttcacataatctgcttatttagctacatgggtggttttgcagaacattatcgtctcatta |
46209359 |
T |
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| Q |
411 |
gtgttcttc |
419 |
Q |
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||||||||| |
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| T |
46209358 |
gtgttcttc |
46209350 |
T |
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