View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_29 (Length: 360)
Name: NF11625_low_29
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_29 |
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| [»] chr4 (4 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 40094145 - 40094489
Alignment:
| Q |
16 |
acatcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataattataatcaattgtagttatgtgcatgttctcatggttgactccatgatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40094145 |
acatcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataattataatcaattgtagttatgtgcatgttctcatggttgactccatgatg |
40094244 |
T |
|
| Q |
116 |
attacgtaattactcaatacgccccctcaagatgtagttgccatcagtaacttgcatgttggaccgaagttcattgaatgtagcatgagacaaaggcttg |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
40094245 |
attacgtaattactcaatacgccccctcaagatgtagttgccatcagtaacttgcatcttggaccgaagttcattgaatgtagcatgagacaaaggcttg |
40094344 |
T |
|
| Q |
216 |
gtaaggaggtcagctatctgatcctttgtcgagacatgtgagacttgaagcttaccgtctcgaacctgctcacgaacaaagtgataatccatggctatat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40094345 |
gtaaggaggtcagctatctgatcctttgtcgagacatgtgagacttgaagcttaccgtctcgaacctgctcacgaacaaagtgataatccatggctatat |
40094444 |
T |
|
| Q |
316 |
gtttcatttttgaatgtagaactgggtttgagcagagatatgtag |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40094445 |
gtttcatttttgaatgtagaactgggtttgagcagagacatgtag |
40094489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 40116855 - 40116973
Alignment:
| Q |
16 |
acatcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataattataatcaattgtagttatgtgcatgttctcatggttgactccatgatg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40116855 |
acatcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataattataatcaattgtagttatgtgcatgttctcatggttgactccatgatg |
40116954 |
T |
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| Q |
116 |
attacgtaattactcaata |
134 |
Q |
| |
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||||||||||||||||||| |
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| T |
40116955 |
attacgtaattactcaata |
40116973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 9004524 - 9004583
Alignment:
| Q |
277 |
gaacctgctcacgaacaaagtgataatccatggctatatgtttcatttttgaatgtagaa |
336 |
Q |
| |
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|||||||||| |||||||| ||||| ||||||| ||||||||||||| |||||||||||| |
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| T |
9004524 |
gaacctgctctcgaacaaaatgatagtccatggatatatgtttcattcttgaatgtagaa |
9004583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 356
Target Start/End: Complemental strand, 2662935 - 2662789
Alignment:
| Q |
210 |
ggcttggtaaggaggtcagctatctgatcctttgtcgagacatgtgagacttgaagcttaccgtctcgaacctgctcacgaacaaagtgataatccatgg |
309 |
Q |
| |
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|||||||| || |||||||| | |||||||| || || ||||| |||||||| ||||| || || || || || ||||| ||||||||||| |||| || |
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| T |
2662935 |
ggcttggtgagaaggtcagcaagttgatccttggtagacacatgagagacttgtagctttccatcacgtacttgttcacgcacaaagtgatagtccaagg |
2662836 |
T |
|
| Q |
310 |
ctatatgtttcatttttgaatgtagaactgggtttgagcagagatat |
356 |
Q |
| |
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||| ||||||||||| || || |||||||| || ||||| |||||| |
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| T |
2662835 |
atatgtgtttcattttggagtggagaactggattagagcatagatat |
2662789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Complemental strand, 6407783 - 6407441
Alignment:
| Q |
18 |
atcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataattataatcaattgtagttatgtgcatgttctcatggttgactccatgatgat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6407783 |
atcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataattataatcaattgtagttatgtgcatgttctcatggttgacgccatgatgat |
6407684 |
T |
|
| Q |
118 |
tacgtaattactcaatacgccccctcaagatgtagttgccatcagtaacttgcatgttggaccgaagttcattgaatgtagcatgagacaaaggcttggt |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
6407683 |
tacgtaattactcaatacgccccctcaagatgtagttgccatcagtaacttgcatcttggaccgaagttcattgaatgtagcataagacaaaggcttggt |
6407584 |
T |
|
| Q |
218 |
aaggaggtcagctatctgatcctttgtcgagacatgtgagacttgaagcttaccgtctcgaacctgctcacgaacaaagtgataatccatggctatatgt |
317 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6407583 |
aaggaggtcagctatctgatcctttgtcgagacatgtgagactagaaggttaccgtctcgaacctgctcacgaacaaagtgataatccatggctatatgt |
6407484 |
T |
|
| Q |
318 |
ttcatttttgaatgtagaactgggtttgagcagagatatgtag |
360 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6407483 |
ttcatttttgaatgtagaactgggtttgagcagagatatgtag |
6407441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 26103431 - 26103547
Alignment:
| Q |
18 |
atcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataattataatcaattgtagttatgtgcatgttctcatggttgactccatgatgat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26103431 |
atcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataattataatcaattgtagttatgtgcatgttctcatggttgactccatgatgat |
26103530 |
T |
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| Q |
118 |
tacgtaattactcaata |
134 |
Q |
| |
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||||||||||||||||| |
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| T |
26103531 |
tacgtaattactcaata |
26103547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 19990771 - 19990889
Alignment:
| Q |
16 |
acatcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataattataatcaattgtagttatgtgcatgttctcatggttgactccatgatg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19990771 |
acatcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataattataatcaattgtagttatgtgcatgttctcatggttgactccatgatg |
19990870 |
T |
|
| Q |
116 |
attacgtaattactcaata |
134 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
19990871 |
attacgtaattactcaata |
19990889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 19292517 - 19292635
Alignment:
| Q |
16 |
acatcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataattataatcaattgtagttatgtgcatgttctcatggttgactccatgatg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||||||| ||||||| ||||||||||||| |
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| T |
19292517 |
acatcaatgtaaataactatagtcaaacacaaaaccaaaatcttcaataattgtaatcaattgtaattatgtgcatgatctcatgcttgactccatgata |
19292616 |
T |
|
| Q |
116 |
attacgtaattactcaata |
134 |
Q |
| |
|
|||||||||||||| |||| |
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|
| T |
19292617 |
attacgtaattacttaata |
19292635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 19298443 - 19298547
Alignment:
| Q |
16 |
acatcaatgtaaataactatagtcaaacacaaaactgaaatcttcaataattataatcaattgtagttatgtgcatgttctcatggttgactccatgatg |
115 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
19298443 |
acatcaatgtaaatatctatagtcaaacacaaaaccaaaatcttcaataattgtaatcaattgtagttatgtgcatgatctcatggttgactccatgatg |
19298542 |
T |
|
| Q |
116 |
attac |
120 |
Q |
| |
|
|||| |
|
|
| T |
19298543 |
gttac |
19298547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 653649 - 653703
Alignment:
| Q |
130 |
caatacgccccctcaagatgtagttgccatcagtaacttgcatgttggaccgaag |
184 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
653649 |
caatacgccccctcaagatgaagttgccatcagtaacttgcatcttggaccgaag |
653703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 325
Target Start/End: Original strand, 653759 - 653883
Alignment:
| Q |
201 |
tgagacaaaggcttggtaaggaggtcagctatctgatcctttgtcgagacatgtgagacttgaagcttaccgtctcgaacctgctcacgaacaaagtgat |
300 |
Q |
| |
|
|||| ||||||||| ||||| || ||||| | || || ||||| || |||||||||||||||| ||| || || |||| || |||| |||||| |||| |
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|
| T |
653759 |
tgagccaaaggcttagtaagaagatcagcgagttggtcttttgttgacacatgtgagacttgaatcttgccatccagaacttgttcactaacaaaatgat |
653858 |
T |
|
| Q |
301 |
aatccatggctatatgtttcatttt |
325 |
Q |
| |
|
| ||||| | |||||| |||||||| |
|
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| T |
653859 |
agtccatagatatatgcttcatttt |
653883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 358
Target Start/End: Complemental strand, 3020076 - 3019854
Alignment:
| Q |
136 |
gccccctcaagatgtagttgccatcagtaacttgcatgttggaccgaagttcattgaatgtagcatgagacaaaggcttggtaaggaggtcagctatctg |
235 |
Q |
| |
|
|||||||||||||| |||| ||||| || |||| ||| ||||||| | ||| | ||| |||| ||| || |||||||| || |||||||| | || |
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|
| T |
3020076 |
gccccctcaagatgaagttaccatctgtgactttcatcttggaccttaattcttcaaatttagctcgaggtaagggcttggtgagaaggtcagcaagttg |
3019977 |
T |
|
| Q |
236 |
atcctttgtcgagacatgtgagacttgaagcttaccgtctcgaacctgctcacgaacaaagtgataatccatggctatatgtttcatttttgaatgtaga |
335 |
Q |
| |
|
|||||| || || ||||| |||||||| ||||| || || || || || ||||| ||||||||||| |||| || ||| ||||||||||| || || ||| |
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|
| T |
3019976 |
atccttggtagacacatgagagacttgtagctttccatcacgtacttgttcacgcacaaagtgatagtccaaggatatgtgtttcattttggagtggaga |
3019877 |
T |
|
| Q |
336 |
actgggtttgagcagagatatgt |
358 |
Q |
| |
|
||||| || ||||| |||||||| |
|
|
| T |
3019876 |
actggattagagcatagatatgt |
3019854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 31347701 - 31347657
Alignment:
| Q |
287 |
acgaacaaagtgataatccatggctatatgtttcatttttgaatg |
331 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| ||||||| |
|
|
| T |
31347701 |
acgaacaaagtgataatccatggcaatgtgtttcattcttgaatg |
31347657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 277 - 336
Target Start/End: Original strand, 1108860 - 1108919
Alignment:
| Q |
277 |
gaacctgctcacgaacaaagtgataatccatggctatatgtttcatttttgaatgtagaa |
336 |
Q |
| |
|
|||||||||| |||||||| ||||| ||||||| ||||||||||||| |||||||||||| |
|
|
| T |
1108860 |
gaacctgctctcgaacaaaatgatagtccatggatatatgtttcattcttgaatgtagaa |
1108919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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