View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_30 (Length: 359)
Name: NF11625_low_30
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_30 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 20351483 - 20351686
Alignment:
| Q |
16 |
acatcatactttggagttaaacattttgttcttgcaatcacaaatgcaccttcatcatcccgaatgcaaatgcctattccaattcggttctcattat--- |
112 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20351483 |
acatcacactttggagttaaacattttgttcttgcaatcacaaatgcaccttcatcatcccgaatgcaaatgcctattccaattcggttctcattattag |
20351582 |
T |
|
| Q |
113 |
---acgatgcatcaatattacatttcattcgacctctattcggcttactccatttaatcacccttgttgactgcgagtgctcaccatctccgttaacaac |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20351583 |
gaaacgatgcatcaatattacatttcattcgacctctattcggcttactccatttaatcacccttgttgactgtgagtgctcaccatctccgttaacaac |
20351682 |
T |
|
| Q |
210 |
attg |
213 |
Q |
| |
|
|||| |
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|
| T |
20351683 |
attg |
20351686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 16 - 213
Target Start/End: Complemental strand, 5583845 - 5583642
Alignment:
| Q |
16 |
acatcatactttggagttaaacattttgttcttgcaatcacaaatgcaccttcatcatcccgaatgcaaatgcctattccaattcggttctcattat--- |
112 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5583845 |
acatcacactttggagttaaacattttgttcttgcaatcacaaatgcaccttcatcatcccgaatgcaaatgcctattccaattcggttctcattattag |
5583746 |
T |
|
| Q |
113 |
---acgatgcatcaatattacatttcattcgacctctattcggcttactccatttaatcacccttgttgactgcgagtgctcaccatctccgttaacaac |
209 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
5583745 |
gaaacgatgcatcaatattacatttcattcaacctctattcggcttactccatttaatcatccttgttgactgcgagtgctcaccatctctgttaacaac |
5583646 |
T |
|
| Q |
210 |
attg |
213 |
Q |
| |
|
|||| |
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|
| T |
5583645 |
attg |
5583642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 213 - 344
Target Start/End: Complemental strand, 2587969 - 2587838
Alignment:
| Q |
213 |
gatataacattttaattaaatctttattttataataacttcgagtagaatcctctaaaacataatatgagtgacagtgtgagaaggacggaaaaatcagt |
312 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2587969 |
gatataacattttaattaaatttttattttataataacttcgagtagaatcctctaaaacataatatgagtgacagtgtgagaaggacggaaaaatcagt |
2587870 |
T |
|
| Q |
313 |
tcgttgtattatgatttaagcaagctcaaact |
344 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
2587869 |
tcgttgtattatgatttaagcaagctcaaact |
2587838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 16 - 213
Target Start/End: Original strand, 19934179 - 19934382
Alignment:
| Q |
16 |
acatcatactttggagttaaacattttgttcttgcaatcacaaatgcaccttcatcatcccgaatgcaaatgcctattccaattcggttctcattat--- |
112 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19934179 |
acatcacactttggagttaaacattttgttcttgcaatcacaaatgcaccttcatcatcccgaatgcaaatgcctattccaattcggttctcattattag |
19934278 |
T |
|
| Q |
113 |
---acgatgcatcaatattacatttcattcgacctctattcggcttactccatttaatcacccttgttgactgcgagtgctcaccatctccgttaacaac |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
19934279 |
gaaacgatgcatcaatattacatttcattcgacctctattcggcttactccatttaatcacccttgttgactgtgagtgctcaccatctccgttaacaac |
19934378 |
T |
|
| Q |
210 |
attg |
213 |
Q |
| |
|
|||| |
|
|
| T |
19934379 |
attg |
19934382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 42311764 - 42311598
Alignment:
| Q |
16 |
acatcatactttggagttaaacattttgttcttgcaatcacaaatgcaccttcatcatcccgaatgcaaatgcctattccaattcggttctcattat--- |
112 |
Q |
| |
|
|||||| |||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
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|
| T |
42311764 |
acatcacactttgaagttaaacattatgttattgcaatcacaaatgcaccttcatcatcccaaatgcaaatgcctattcaaattcggttctcattattag |
42311665 |
T |
|
| Q |
113 |
---acgatgcatcaatattacatttcattcgacctctattcggcttactccatttaatcacccttgt |
176 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42311664 |
gaaacgatgcatcaatattacatttcattcgacctctattcggcttactccatttaatcacccttgt |
42311598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 93
Target Start/End: Complemental strand, 35537321 - 35537252
Alignment:
| Q |
24 |
ctttggagttaaacattttgttcttgcaatcacaaatgcaccttcatcatcccgaatgcaaatgcctatt |
93 |
Q |
| |
|
||||||||||||||||| |||| ||||| ||||||| ||||||||| || ||||||||||||||||| |
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|
| T |
35537321 |
ctttggagttaaacattatgtttttgcatgaacaaatgtaccttcatcgtcatgaatgcaaatgcctatt |
35537252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 23 - 213
Target Start/End: Original strand, 39118372 - 39118568
Alignment:
| Q |
23 |
actttggagttaaacattttgttcttgcaatcacaaatgcaccttcatcatcccgaatgcaaatgcctattccaattcggttctcattat------acga |
116 |
Q |
| |
|
|||||||||||||||||| |||| | |||| |||||||||||||||||| ||| ||||||||||| | || ||||||| |||||||||| || | |
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|
| T |
39118372 |
actttggagttaaacattatgttttcgcaagcacaaatgcaccttcatcgtcctgaatgcaaatgtttgtttcaattcgattctcattattaagaaacaa |
39118471 |
T |
|
| Q |
117 |
tgcatcaatattacatttcattcgacctctattcggcttactccatttaatcacccttgttgactgcgagtgctcaccatctccgttaacaacattg |
213 |
Q |
| |
|
||||||||| || ||||||||||||||| ||| ||||||||||||||||| |||| || |||| |||||||||||| || || | ||||||||||| |
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|
| T |
39118472 |
tgcatcaatgttgcatttcattcgacctttatgcggcttactccatttaaccacctttagtgaccgcgagtgctcacgatttctgctaacaacattg |
39118568 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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