View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11625_low_32 (Length: 346)
Name: NF11625_low_32
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_32 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 11 - 300
Target Start/End: Original strand, 23693018 - 23693307
Alignment:
| Q |
11 |
cacagatattgcgcgatgcaaggttcttgcattttgaaatacattgtgttgaaatataattctaaactcttgtatatgttttgttttgtactacgtttag |
110 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23693018 |
cacagatattgcgcgatacaaggttcttgcattttgaaatacatcgtgttgaaatataattctaaactcttgtatatgttttgttttgtactacgtttag |
23693117 |
T |
|
| Q |
111 |
ttggttagtaaccacgtgataagaccttccttgtgatttaggcaagcttggtacaactgaaaatgaaatggtggaaattttagtgatgaaaatgctgaaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23693118 |
ttggttagtaaccacgtgataagaccttccttgtgatttaggcaagcttggtacaactgaaaatgaaatggtggaaattttagtgatgaaaatgctgaaa |
23693217 |
T |
|
| Q |
211 |
aactgtgttctggtctacaatttttgaactatttcaaaataaatgctgaatattgtattaaaactacatttagttgtataaacatgtcta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
23693218 |
aactgtgttctggtctacaatttttgaactatttcaaaataaatgctgaatattgtattaaaactgcatttagttgtataaacatatcta |
23693307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 23747421 - 23747497
Alignment:
| Q |
127 |
tgataagaccttccttgtgatttaggcaagcttggtacaactgaaaatgaaatggtggaaattttagtgatgaaaat |
203 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
23747421 |
tgataagaccttccttgtgattcaggcatgcttggtacaactaaaaatgaaatggtggaattttcagtgatgaaaat |
23747497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 23689265 - 23689312
Alignment:
| Q |
29 |
caaggttcttgcattttgaaatacattgtgttgaaatataattctaaa |
76 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23689265 |
caaggttcttgcattttgaaatacatcgtgttgaaatataattctaaa |
23689312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 19565660 - 19565627
Alignment:
| Q |
23 |
gcgatgcaaggttcttgcattttgaaatacattg |
56 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
19565660 |
gcgatacaaggttcttgcattttgaaatacattg |
19565627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Complemental strand, 24199523 - 24199483
Alignment:
| Q |
57 |
tgttgaaatataattctaaactcttgtatatgttttgtttt |
97 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
24199523 |
tgttgaaatataattgcaaactcttgtatatgttttatttt |
24199483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 10334031 - 10334070
Alignment:
| Q |
57 |
tgttgaaatataattctaaactcttgtatatgttttgttt |
96 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
10334031 |
tgttgaaatataattgcaaactcttgtatatgttttgttt |
10334070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 12831993 - 12832059
Alignment:
| Q |
57 |
tgttgaaatataattctaaactcttgtatatgttttgttttgtactacgtt-tagttggttagtaac |
122 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || ||||||||| ||| ||||| ||||||||| |
|
|
| T |
12831993 |
tgttgaaatataattgcaaactcttgtatatgtgtttgtttgtactatgttctagttagttagtaac |
12832059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University