View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_33 (Length: 343)
Name: NF11625_low_33
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 330
Target Start/End: Complemental strand, 41416825 - 41416512
Alignment:
| Q |
17 |
aaagaaagaatgttaaatacaaagatgtgtaatcataatttcacaagttaaacattttacaaaatcaaatctacatctttcacattttgacttgatataa |
116 |
Q |
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| T |
41416825 |
aaagaaagaatgttaaatacaaagatgtgtaatcataatttcacaagttaaacattttacaaaatcaaatctacatctttcacattttgacttgatataa |
41416726 |
T |
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| Q |
117 |
attattatcatgagaagtatataggaatgatattttcattcttgaagatagaaaaaacaaagcattcttcttttgaatgaatctctttgaggaagggtga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41416725 |
attattatcatgagaagtatataggaatgatattttcattcttgaagatagaaaaaacaaagcattcttcttttgaatgaatctctttgaggaagggtga |
41416626 |
T |
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| Q |
217 |
atcaagaatatggctggtgggacttttacaacaagtaatgtggacaacgaaagggcagagctttataaagggagggtcactccctatgttatcattgcat |
316 |
Q |
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| T |
41416625 |
atcaagaatatggctggtgggacttttacaacaagtaatgtggacaacgaaagggcagagctttataaagggagggtcactccctatgttatcattgcat |
41416526 |
T |
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| Q |
317 |
gcattgttgctgct |
330 |
Q |
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| T |
41416525 |
gcattgttgctgct |
41416512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 36297170 - 36297023
Alignment:
| Q |
29 |
ttaaatacaaagatgtgtaatcataatttcacaagttaaacattttacaaaatcaaatctacatctttcacattttgacttgatataa---attattatc |
125 |
Q |
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| T |
36297170 |
ttaaatacatagttgcgtaatcacaatttcacaagtttaacattttgcaaaatcatatttacatctttcatggtttgacttgatataatataatattgtt |
36297071 |
T |
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| Q |
126 |
atgagaagtatataggaatgatattttcattcttgaagatagaaaaaa |
173 |
Q |
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| T |
36297070 |
atgagaagtataaaagaatgatattttcattcttgaagatagaaaaaa |
36297023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 36296926 - 36296865
Alignment:
| Q |
265 |
gaaagggcagagctttataaagggagggtcactccctatgttatcattgcatgcattgttgc |
326 |
Q |
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| T |
36296926 |
gaaagggcagagctttataaagggaaagttacttggtatgttatcattgcttgcattgttgc |
36296865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 330
Target Start/End: Original strand, 48342476 - 48342544
Alignment:
| Q |
262 |
aacgaaagggcagagctttataaagggagggtcactccctatgttatcattgcatgcattgttgctgct |
330 |
Q |
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| T |
48342476 |
aacggaagggcagagcaatataagggaagggtcactgttcatgttatcattgcttgcattgttgctgct |
48342544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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