View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_34 (Length: 341)
Name: NF11625_low_34
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_34 |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: scaffold0023 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 17 - 334
Target Start/End: Complemental strand, 114621 - 114304
Alignment:
| Q |
17 |
aattctgtcattgcctacttgctcccccaggttccataaattgtccgaccacattgcacacggtaaggggacattactaggttgtgaagtagaagcacaa |
116 |
Q |
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| T |
114621 |
aattctgtcattgcctacttgctcccccaggttccataaattgtccgaccacattgcacacggtaaggggacattactaggttgtgaagtagaagcacaa |
114522 |
T |
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| Q |
117 |
tctctaccacttttatttggatggataggctctgagtcgtgaacatctttggtaatattaccatctttatttgaatccattacagactgtgtcacaaaac |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
114521 |
tctctaccacttttatttggatggataggctctgagtcgtgaacatctttggtaatattaccatctttatttgaatccattacagactgtgtcacaaaac |
114422 |
T |
|
| Q |
217 |
tacaatgtttcctattaaaccaaggagaatcaggtgaaaaagtttgaggttgaggtttaataacatcatgacctttcacattttcctttggtattttctc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
114421 |
tacaatgtttcctattaaaccaaggagaatcaggtgaaaaagtttgaggttgaggtttaataacatcatgacctttcacattttcctttggtattttctc |
114322 |
T |
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| Q |
317 |
ttcttttatttcttctct |
334 |
Q |
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|||||||||||||||||| |
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| T |
114321 |
ttcttttatttcttctct |
114304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 32 - 135
Target Start/End: Original strand, 33821328 - 33821437
Alignment:
| Q |
32 |
tacttgctcccccaggttccataaattgtccgaccacattgcacacggtaaggggacatta-ctag-----gttgtgaagtagaagcacaatctctacca |
125 |
Q |
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| T |
33821328 |
tacttgttcccccaagttccataaactgtccgaccacattccacatggtacgggaacattacctagactttgttgtgaagcagaagcacaatctctacca |
33821427 |
T |
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| Q |
126 |
cttttatttg |
135 |
Q |
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| T |
33821428 |
atttgatttg |
33821437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 287
Target Start/End: Original strand, 33865739 - 33865821
Alignment:
| Q |
205 |
gtgtcacaaaactacaatgtttcctattaaaccaaggagaatcaggtgaaaaagtttgaggttgaggtttaataacatcatga |
287 |
Q |
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| T |
33865739 |
gtgtcacaaaattattatatttcccattcaaccatggtgaatgagatgaaaaagttcgaggttgaggtttaataacttcatga |
33865821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 33733847 - 33733950
Alignment:
| Q |
28 |
tgcctacttgctcccccaggttccataaattgtccgaccacattgcacacggtaaggggacat------tactaggttgtgaagtagaagcacaatctct |
121 |
Q |
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| T |
33733847 |
tgcctacttgttcacccaagtcccataaattgtccgacgacaatgcacacggtattggaacattatctatacttggttgtgaagcagaagcacagtctct |
33733946 |
T |
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| Q |
122 |
acca |
125 |
Q |
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|||| |
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| T |
33733947 |
acca |
33733950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 294
Target Start/End: Original strand, 33734155 - 33734245
Alignment:
| Q |
204 |
tgtgtcacaaaactacaatgtttcctattaaaccaaggagaatcaggtgaaaaagtttgaggttgaggtttaataacatcatgacctttca |
294 |
Q |
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| T |
33734155 |
tgtgacacaaaattaacatgtttcctattcaaccatgatgaatgagttgaaaaaattcgaggttggggtttaataacttcatgagctttca |
33734245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 286
Target Start/End: Original strand, 33762589 - 33762702
Alignment:
| Q |
173 |
attaccatctttatttgaatccattacagactgtgtcacaaaactacaatgtttcctattaaaccaaggagaatcaggtgaaaaagtttgaggttgaggt |
272 |
Q |
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||||||||||||||||||| ||| ||| | ||||| |||||| || || ||| | || ||||| || |||| || ||||||| || ||||||||||| |
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| T |
33762589 |
attaccatctttatttgaagccagtactggttgtgtaacaaaattattttgcttcttgttcaaccatggtgaatgagttgaaaaaattcgaggttgaggt |
33762688 |
T |
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| Q |
273 |
ttaataacatcatg |
286 |
Q |
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|||||||| ||||| |
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| T |
33762689 |
ttaataacttcatg |
33762702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 5471597 - 5471497
Alignment:
| Q |
31 |
ctacttgctcccccaggttccataaattgtccgaccacattgcacacggtaaggggacattac------taggttgtgaagtagaagcacaatctctacc |
124 |
Q |
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| T |
5471597 |
ctacttgctcccccaagttccataaactttctgaccacattgtacaaggtattgggacattacctagaattggttgtgaagaagaagcacaatctttacc |
5471498 |
T |
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| Q |
125 |
a |
125 |
Q |
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| T |
5471497 |
a |
5471497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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