View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11625_low_37 (Length: 301)
Name: NF11625_low_37
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11625_low_37 |
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Alignment Details
Target: chr8 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 33785137 - 33785416
Alignment:
| Q |
1 |
tatgcttcgggttttgtttgtcagacttttgaacatgagcactatgcacaagcctgataaggtatgggatgcgacttggaaaatgttggctgatggaatt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||| |
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| T |
33785137 |
tatgcttcgggttttgtttgtcagacttttgaacatgagcactatgcacaagcttgataaggtgtgggatgcaacttggaaaatgttggctgatggaatt |
33785236 |
T |
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| Q |
101 |
ctatatgcaagacgaaggaagttggatattccaggtttaaacttaataattcnnnnnnngtctcaaacttgataattctatatgcattttacacttaagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33785237 |
ctatatgcaagacgaaggaagttggatattccaggtttaaacttaataattctttttttgtctcaaacttgataattctatatgcattttacacttaagt |
33785336 |
T |
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| Q |
201 |
agaacctgctaaatattctaactgttttatgccatcatgttttcttaagtcacattaaaaccaaaaaattagggtgcacc |
280 |
Q |
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| T |
33785337 |
agaacctgctaaatattctaactgttttatgccatcatgttttcttaattcacattaaaaccaaaaaattagggtgcacc |
33785416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 136
Target Start/End: Original strand, 39489047 - 39489151
Alignment:
| Q |
29 |
ttgaacatgagcactatgcacaagcctgataaggtatgggatgcgacttggaaaatgttggctgatggaattctatatgcaagacgaaggaagttggata |
128 |
Q |
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|||||||||||||| ||| |||| |||| ||| || ||| || ||| ||||| ||||||||||||||||||| ||| ||||||||||| | | ||| |
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| T |
39489047 |
ttgaacatgagcaccatgaacaaccctggtaaagtctggaat---actaggaaattgttggctgatggaattctctatcaaagacgaaggatgctaaata |
39489143 |
T |
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| Q |
129 |
ttccaggt |
136 |
Q |
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|||||||| |
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| T |
39489144 |
ttccaggt |
39489151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 50 - 280
Target Start/End: Complemental strand, 1561071 - 1560841
Alignment:
| Q |
50 |
aagcctgataaggtatgggatgcgacttggaaaatgttggctgatggaattctatatgcaagacgaaggaagttggatattccaggtttaaacttaataa |
149 |
Q |
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|||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1561071 |
aagcttgataaggtgtgggatgcaacttggaaaatgttggctgatggaattctatatgcaagacgaaggaagttggatattccaggtttaaacttaataa |
1560972 |
T |
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| Q |
150 |
ttcnnnnnnngtctcaaacttgataattctatatgcattttacacttaagtagaacctgctaaatattctaactgttttatgccatcatgttttcttaag |
249 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1560971 |
ttctttttttgtctcaaacttgataattctatatgcattttacacttaagtagaacctgctaaatattctaactgttttatgccatcatgttttcttaat |
1560872 |
T |
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| Q |
250 |
tcacattaaaaccaaaaaattagggtgcacc |
280 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1560871 |
tcacattaaaaccaaaaaattagggtgcacc |
1560841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 23371899 - 23372016
Alignment:
| Q |
2 |
atgcttcgggttttgtttgtcagacttttgaacatgagcactatgcacaagcctgataaggtatgggatgcgacttggaaaatgttggctgatggaattc |
101 |
Q |
| |
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||||| || ||||||||||| |||||||| | |||||| || ||||||||||||||||| |||||| | || |||||||| | || ||||||||||||| |
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| T |
23371899 |
atgctccgtgttttgtttgttagacttttaatcatgagtacaatgcacaagcctgataatgtatggaaagctacttggaagttattagctgatggaattc |
23371998 |
T |
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| Q |
102 |
tatatgcaagacgaagga |
119 |
Q |
| |
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| T |
23371999 |
tctatgcaagacgaagga |
23372016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 1561220 - 1561172
Alignment:
| Q |
1 |
tatgcttcgggttttgtttgtcagacttttgaacatgagcactatgcac |
49 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1561220 |
tatgcttcgggttttgtttgtcagacttttgaacatgagcactatgcac |
1561172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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