View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11625_low_38 (Length: 293)

Name: NF11625_low_38
Description: NF11625
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11625_low_38
NF11625_low_38
[»] chr5 (3 HSPs)
chr5 (18-293)||(32268389-32268666)
chr5 (17-240)||(41900418-41900643)
chr5 (36-145)||(41886552-41886661)
[»] chr3 (2 HSPs)
chr3 (31-146)||(51113137-51113252)
chr3 (31-147)||(51763330-51763446)
[»] chr4 (7 HSPs)
chr4 (31-148)||(7225101-7225218)
chr4 (35-147)||(553759-553871)
chr4 (16-149)||(1755551-1755686)
chr4 (113-149)||(3437642-3437678)
chr4 (41-152)||(21833227-21833338)
chr4 (31-68)||(53760233-53760270)
chr4 (115-147)||(7308551-7308583)
[»] chr8 (4 HSPs)
chr8 (178-265)||(27923057-27923144)
chr8 (35-147)||(17642879-17642991)
chr8 (118-147)||(17635683-17635712)
chr8 (113-146)||(32151969-32152002)
[»] chr7 (1 HSPs)
chr7 (113-147)||(10615713-10615747)
[»] chr6 (2 HSPs)
chr6 (112-149)||(8913441-8913478)
chr6 (113-147)||(6417092-6417126)
[»] chr1 (3 HSPs)
chr1 (113-169)||(7555176-7555232)
chr1 (113-152)||(17352685-17352724)
chr1 (113-145)||(19467453-19467485)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 32268666 - 32268389
Alignment:
Q  18 cttctctgtcaaatctc--gttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaaaa 115  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  32268666 cttctctgtcaaatctctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaaga 32268567  T
Q  116 agattacaactttgacctctctcacttgttccaaaatgcaatatatcaatagcagcgatcttgtacttatctctcattgtttccccttgttggaagtcct 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268566 agattacaactttgacctctctcacttgttccaaaatgcaatatatcaatagcagcgatcttgtacttatctctcattgtttccccttgttggaagtcct 32268467  T
Q  216 agacctcagttaccccacacaatgctaccacggggccgtagagctttcactttccaaactccgcaagattaatctctc 293  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32268466 agacctcaattaccccacacaatgctaccacggggccgtagagctttcactttccaaactccgcaagattaatctctc 32268389  T

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Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 41900418 - 41900643
Alignment:
Q  17 acttctctgtcaaatctcg--ttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaaa 114  Q
    |||||| |||||||||||   |||||||||||||||||| |||||||| |||||| || || || |||| ||| || ||||||| |   ||||||| |||    
T  41900418 acttctttgtcaaatctctcattttccattgaaactcacatcactcaaactctcagaccaaagcgtcatccccgcatttgggtttcgagctttttccaaa 41900517  T
Q  115 aagattacaactttgacctctctcacttgttccaaaatgcaatatatcaatagcagcgatcttgtacttatctctcattgtttccccttgttggaagtcc 214  Q
    ||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||| ||||||||||| | |||||||| ||||||||||| |    
T  41900518 aagattacaactttgacctctctcacttgttacgaaatgcattatatcaatagcagcgatcttttacttatctctgactgtttccctttgttggaagttc 41900617  T
Q  215 tagacctcagttaccccacacaatgc 240  Q
    | || ||||| |||||||||||||||    
T  41900618 tcgatctcagataccccacacaatgc 41900643  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 145
Target Start/End: Original strand, 41886552 - 41886661
Alignment:
Q  36 ttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagacttttt-cgaaaaagattacaactttgacctc 134  Q
    |||||||||||||||||| ||||||||||| ||  |  || | || |||||||||| |||||||| || ||||| | ||||||||||||||||| |||||    
T  41886552 ttttccattgaaactcacatcactcaatctttcgtatcaacgtattattcccacaaatgggttgc-gagtttttgccaaaaagattacaactttaacctc 41886650  T
Q  135 tctcacttgtt 145  Q
    ||||| |||||    
T  41886651 tctcatttgtt 41886661  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 31 - 146
Target Start/End: Original strand, 51113137 - 51113252
Alignment:
Q  31 tctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaaaaagattacaactttga 130  Q
    |||||||| ||||||||||| || ||||||||| |||| |||||| |||| |||||||||| ||| ||||   |||| ||| |||| ||||||||| |||    
T  51113137 tctcgtttcccattgaaacttacttcactcaatatctccaacaaaagcattattcccacaaatggattgcgagctttctcggaaaatattacaactctga 51113236  T
Q  131 cctctctcacttgttc 146  Q
    ||||||||||||||||    
T  51113237 cctctctcacttgttc 51113252  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 147
Target Start/End: Original strand, 51763330 - 51763446
Alignment:
Q  31 tctcgttttccattgaaactcacgtcactcaatctctc-aaacaaatgcatcattcccacaattgggttgcagactttttcgaaaaagattacaactttg 129  Q
    |||||||| |||||||||||||| ||||| |||||||| |||||  |  | | |||| |||| ||||||||    ||||||  |||||||||||||||||    
T  51763330 tctcgtttcccattgaaactcacatcacttaatctctccaaacagctt-acctttcctacaaatgggttgcgagttttttcacaaaagattacaactttg 51763428  T
Q  130 acctctctcacttgttcc 147  Q
    || |||||||||||||||    
T  51763429 acatctctcacttgttcc 51763446  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 148
Target Start/End: Original strand, 7225101 - 7225218
Alignment:
Q  31 tctcgttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaaaaagattacaactttga 130  Q
    ||||||||||||||||||||||| ||||| ||| |||| || |||| |||||||||  ||  |||||||||  || ||||  |||| |||||||||||||    
T  7225101 tctcgttttccattgaaactcacatcacttaatatctcgaataaatccatcattccagcacgtgggttgcaagctctttctcaaaatattacaactttga 7225200  T
Q  131 cctctctcacttgttcca 148  Q
    |||||||||| |||||||    
T  7225201 cctctctcacatgttcca 7225218  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 553871 - 553759
Alignment:
Q  35 gttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaaaaagattacaactttgacctc 134  Q
    ||||||||||||| ||||| |||||| |||||||  | |||  || ||||||| ||| ||||||||   |||| ||  |||| |||||||||||||||||    
T  553871 gttttccattgaacctcacatcactcgatctctcccaaaaacccaccattcccgcaaatgggttgcgagctttctcccaaaacattacaactttgacctc 553772  T
Q  135 tctcacttgttcc 147  Q
    |||||| ||||||    
T  553771 tctcacctgttcc 553759  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 1755686 - 1755551
Alignment:
Q  16 cacttctctgtcaaatctc--gttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaa 113  Q
    |||||||||| ||||||||  |||| ||||||||||| || ||  | |||||||| ||| ||  |  ||||||||| |  ||||||||  |||| ||  |    
T  1755686 cacttctctgccaaatctctcgtttcccattgaaacttacatcgtttaatctctccaaccaacacgccattcccaccaaagggttgcaagctttctctca 1755587  T
Q  114 aaagattacaactttgacctctctcacttgttccaa 149  Q
    ||||||||||||||||||||||||||| ||||||||    
T  1755586 aaagattacaactttgacctctctcacatgttccaa 1755551  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 149
Target Start/End: Original strand, 3437642 - 3437678
Alignment:
Q  113 aaaagattacaactttgacctctctcacttgttccaa 149  Q
    ||||||||||||||||||||||||||| |||||||||    
T  3437642 aaaagattacaactttgacctctctcagttgttccaa 3437678  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 152
Target Start/End: Original strand, 21833227 - 21833338
Alignment:
Q  41 cattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcga-aaaagattacaactttgacctctctca 139  Q
    |||||||  ||| |||||||||| |||| ||||||  || ||||||| ||  |||||||| || |||||  | |||| ||||| ||||||||||||||||    
T  21833227 cattgaacatcaagtcactcaatatctccaacaaacccaccattcccgcagatgggttgc-gagtttttgcacaaaacattactactttgacctctctca 21833325  T
Q  140 cttgttccaaaat 152  Q
    |||||||||||||    
T  21833326 cttgttccaaaat 21833338  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 53760233 - 53760270
Alignment:
Q  31 tctcgttttccattgaaactcacgtcactcaatctctc 68  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  53760233 tctcgtttcccattgaaactcacatcactcaatctctc 53760270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 7308583 - 7308551
Alignment:
Q  115 aagattacaactttgacctctctcacttgttcc 147  Q
    ||||||||||||||||||| |||||||||||||    
T  7308583 aagattacaactttgacctgtctcacttgttcc 7308551  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 265
Target Start/End: Complemental strand, 27923144 - 27923057
Alignment:
Q  178 gtacttatctctcattgtttccccttgttggaagtcctagacctcagttaccccacacaatgctaccacggggccgtagagctttcac 265  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||||||||||   ||| |||||||| || || |||||||||||||    
T  27923144 gtacttatctctcattatttccctttgttggaagtcctcgacctcagttaccctttacactgctaccatggtgctgtagagctttcac 27923057  T

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Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 17642879 - 17642991
Alignment:
Q  35 gttttccattgaaactcacgtcactcaatctctcaaacaaatgcatcattcccacaattgggttgcagactttttcgaaaaagattacaactttgacctc 134  Q
    ||||||||||||||||||| |||||||||||||| ||| |   || ||||||||| | |||||| ||  |||| ||  | || |||||||||||||||||    
T  17642879 gttttccattgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctc 17642978  T
Q  135 tctcacttgttcc 147  Q
    |||||||||||||    
T  17642979 tctcacttgttcc 17642991  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 147
Target Start/End: Original strand, 17635683 - 17635712
Alignment:
Q  118 attacaactttgacctctctcacttgttcc 147  Q
    ||||||||||||||||||||||||||||||    
T  17635683 attacaactttgacctctctcacttgttcc 17635712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 32152002 - 32151969
Alignment:
Q  113 aaaagattacaactttgacctctctcacttgttc 146  Q
    |||| |||||||||||||||||||||||||||||    
T  32152002 aaaacattacaactttgacctctctcacttgttc 32151969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 10615747 - 10615713
Alignment:
Q  113 aaaagattacaactttgacctctctcacttgttcc 147  Q
    |||||||||||||||||||||||||||||||||||    
T  10615747 aaaagattacaactttgacctctctcacttgttcc 10615713  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 149
Target Start/End: Original strand, 8913441 - 8913478
Alignment:
Q  112 aaaaagattacaactttgacctctctcacttgttccaa 149  Q
    |||||||||||||||||||||||||||| |||||||||    
T  8913441 aaaaagattacaactttgacctctctcaattgttccaa 8913478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 147
Target Start/End: Complemental strand, 6417126 - 6417092
Alignment:
Q  113 aaaagattacaactttgacctctctcacttgttcc 147  Q
    |||||| ||||||||||||||||||||||||||||    
T  6417126 aaaagaatacaactttgacctctctcacttgttcc 6417092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 7555232 - 7555176
Alignment:
Q  113 aaaagattacaactttgacctctctcacttgttccaaaatgcaatatatcaatagca 169  Q
    |||| ||||||||||| ||||| |||||||||||||||||| | | |||||||||||    
T  7555232 aaaatattacaactttaacctcactcacttgttccaaaatggattctatcaatagca 7555176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 152
Target Start/End: Complemental strand, 17352724 - 17352685
Alignment:
Q  113 aaaagattacaactttgacctctctcacttgttccaaaat 152  Q
    ||||||||||||| ||||||||||||| ||||||||||||    
T  17352724 aaaagattacaacattgacctctctcatttgttccaaaat 17352685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 145
Target Start/End: Original strand, 19467453 - 19467485
Alignment:
Q  113 aaaagattacaactttgacctctctcacttgtt 145  Q
    |||| ||||||||||||||||||||||||||||    
T  19467453 aaaatattacaactttgacctctctcacttgtt 19467485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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